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Detailed information on CNT30103236

BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 1e-37

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30696173	Oryza rufipogon	Oryza sativa	54	65.48	100	533	forward
CNT30522444	Oryza rufipogon	Setaria italica	35.26	59.28	88.51	348	forward
CNT30187536	Oryza rufipogon	Secale cereale	42.25	47.93	94.72	417	forward
CNT30301046	Oryza rufipogon	Triticum aestivum	49.54	59.13	92.43	489	forward
CNT30393967	Oryza rufipogon	Triticum turgidum	37.49	61.67	94.59	370	forward
CNT30251938	Oryza rufipogon	Avena sativa	48.83	60.94	90.66	482	forward
CNT30665949	Oryza rufipogon	Triticum dicoccoides	49.54	57.53	92.64	489	forward
CNT30473044	Oryza rufipogon	Saccharum spontaneum	49.75	55.73	91.04	491	forward
CNT30129613	Oryza rufipogon	Corymbia citriodora	42.55	57.38	90.48	420	forward
CNT30685781	Oryza rufipogon	Triticum urartu	41.03	46.44	91.11	405	forward
CNT30108138	Oryza rufipogon	Oryza longistaminata	81.97	99.88	99.13	809	forward
CNT30499073	Oryza rufipogon	Digitaria exilis	35.87	47.52	88.14	354	forward
CNT30603587	Oryza rufipogon	Oryza punctata	34.45	66.93	95.29	340	forward

Expression of CNT30103236

Peptides detected in this lncRNA

>peptide 1 (64 aa)
DPIYCIRKFKVLINPSMPQYKQFRLHIYTIHSQKWLYFGIEGVFVSDLIEMRNPLIRITPRIST*

>peptide 2 (74 aa)
MAWTKKPNMENMARRPFLISFTLSSANASGSSARSSGKTQPSAPSIAHREWITSSSRFLANVSGSAESPAVSHP*

>peptide 3 (33 aa)
MVIFWDRGSICFRSNRDEKSANQNNTTDKYLDH*

>peptide 4 (39 aa)
MVIRASPKSAEEVDGAARAITGEESAMVAAAIDAVSCES*

Sequence

>CNT30103236
GACCCAATCTATTGTATACGTAAATTTAAAGTACTAATTAATCCTTCCATGCCACAATATAAACAATTTAGACTACATATTTATACTATACATAGCCAGA
AATGGTTATATTTTGGGATCGAGGGAGTATTTGTTTCCGATCTAATAGAGATGAGAAATCCGCTAATCAGAATAACACCACGGATAAGTACCTAGACCAT
TAGTTGGGAAACGAATAAAATCATTATTGCAAAAACATCATCTTCTTCTTCATCTTCTTAGTGTACACAACACCAACTCGATCATCATCTCGTCGCACTA
AACCCATCTTCCCCAACCCAAAGACAACGAACTCGCTGGCCACAAATCCATCCAACCACAATTAACCACTGCTAAGCTACGGTCCCCCACTTCACTTGCC
GGGGACGAAGTTGGTGGCGTACGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGTGGTCGGCGAGGTTCTCGAGGGGGCCCTTGCCGGTGACGATGGCC
TGGACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCCGCGAACGCCTCGGGGTCATCGGCGAGGAGCT
CCGGGAAGACGCAGCCGAGCGCGCCCAGCATCGCCCACCGGGAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCCGGGTCGGCGGAGAGCCC
CGCGGTGTCCCACCCGTAGTCGCCCGGGAACTCGCCGGTGAGGTAGCTCGGCGGCTCGCCGGAGAGCGGGCCGAGGTAGAGGACGCGGTCGGCGCCGTAC
CACGGGCTCCCCGACGACGCCGCCGGCTTGGGCTTCGCGGCGGTCTTGCGCATGGTGATCCGCGCCTCGCCGAAGAGCGCGGAGGAGGTCGACGGCGCCG
CGCGGGCCATCACCGGGGAGGAGAGCGCCATGGTGGCCGCGGCCATTGATGCAGTGAGCTGTGAGAGCTGAGAGAGATGGCGATGAG