CANTATAdb - search

Detailed information on CNT30103148

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30695798	Oryza rufipogon	Oryza sativa	88.64	100.46	99.54	874	forward

Expression of CNT30103148

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MGFFSSFFLALFIARLAFHAIFKIETNHSVGI*

>peptide 2 (36 aa)
MYLVIENTMYCFLSSSNGTKTSGRLDLEVNPIVCFN*

>peptide 3 (30 aa)
MALSPEPMFTAAAGGEREEALDAADVLGFG*

>peptide 4 (76 aa)
MPFSKLKQIIALEYKVNCLYFSINLSFWVELISACNSIDSTPMLLCDKEMYKRGGDRVWLKQNIKIISTSYLCIHT*

Sequence

>CNT30103148
TTGTCTGATGAGCAACAATCGCTGTGCTGAATCAGAGCAGAGGTGGAAAACGTACAGAGGAAAGGCGTTTTCTCAATAAGATTGCGTAATTTATTTATGT
AACCTGTAAGCCACTAAGTGGTGGGACCTGAGGAGTATGTGTCGCGTGTGTGAGGGGGATTAATACCGCGTCCAAAACTATCGAAGAAAAAAGAAAAGAT
TCCCCTCCTCTGCTTCTCGTGTTCTCTTCTTCCTCCCGTCTCTACTCCTATTCTATCGGATCTCCGGCGAGCAGCGCCGCCGGCGATCGGGGTCGTAACA
TGGCCTTGTCGCCGGAGCCCATGTTCACGGCGGCGGCCGGCGGCGAGCGCGAGGAAGCCCTAGACGCGGCGGATGTGTTGGGGTTTGGGTGAGCGCAATT
ACCATGGGTTTTTTTTCTTCTTTTTTCTTGGCTTTGTTTATTGCTAGATTAGCCTTTCATGCCATTTTCAAAATTGAAACAAATCATAGCGTTGGAATAT
AAAGTGAATTGTCTGTATTTCTCCATCAACTTAAGCTTTTGGGTTGAACTGATCAGTGCATGTAACTCAATAGATAGTACTCCTATGTTATTGTGTGATA
AGGAAATGTATAAAAGAGGAGGAGATAGAGTTTGGTTGAAACAAAATATCAAAATTATTTCAACAAGCTACCTTTGTATTCACACATAAAAACTCTCACA
CATGTGTATGATTCAACTTTGCATTTATGTATTTGAACACTAACTTATATGAGTAAGATCTCGTCAACAACCAGCATTTTTCACCAGGTGCTCGCCTATT
AGTAGAGCTCATCAACCTCAGTAAATAAGTAACAAAATGTACTTAGTTATAGAAAATACGATGTACTGCTTTCTTAGTAGCAGCAACGGTACTAAAACAT
CTGGTAGACTAGATCTTGAAGTAAATCCGATCGTTTGTTTCAACTAAACTACATCTCTTCCCATGCAAAAGTATCTCAAGTACGAA