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Detailed information on CNT30103110


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9C5N2|TMN9_ARATH, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695507Oryza rufipogonOryza sativa72.6993.8699.631086forward
CNT30469220Oryza rufipogonSaccharum spontaneum65.7366.889.71982forward
CNT30577272Oryza rufipogonOryza barthii63.4592.5899.47948forward

Expression of CNT30103110

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MSSIAVINPPRFDGERKPKTANIMVTSSIPKNWTPVPT*

>peptide 2 (52 aa)
MKNSSMKTAPNGRIPPIRMVKAGFMYPACSGICLGILLVFTGASMAGFLKPR*

Sequence

>CNT30103110
CTGACTGACTGATTACACGTACGTCACACAGCAATATGGCTACTTTTCAACTCACCCAAAGAAAAACCGGAGCAAAGCAGCTGCTGGTGATACTATCTTG
GAAGGGTAAAAAATGATCAGAAAACAGTAGTATTCGGTCCCGTATATAATAAAATGAATTTATACAGAGATCCATAAGAATTGAGAATAATATGCTCTGC
CATACGAAACTAACAATCGTAACTAGCCTTATATAACTTCATATCAAAGATGTATCATCTCATTTATAGTGAATGAACACAAGTGGTTTATAAGCTAAGA
ACTACGATATAAATTTTCTCGAAAATCGGTAAAATACAGAGTGGATTCTGATCCTCGTCTCACAATTCTCCACAATAATCATACAGAACTTTTGGAAGCC
GGATGTATAGCAACTCTGCGCCTAGTCAATCTTCACAGATGAGTAAATCAATCTCGTGAACCACAAGCAGGCACAGAAACCAATTGTGCCAGTGAGCACG
AAGAAAGAGAATGAGGCCAGAAGCATGTAGCCGAAGTACAGAATGCCTGACACCAGTTTAGTAATCTGCAGCTTGGTGAAGAAGTAGAACCCAGCATACA
GGAAGAGATAGATCGCAGATGATCCTGAGGTGAGATAGGACCTCCACCACCACATGTAATCCTCACTGCACAGTTGGAAGTAGCACAGCACGATTGCAAT
CTCCCCACAAGTGATGATGAGGATAATGAACACGAGGAAAAGGAAGCCGAAGATGTAGTAAAACTGGTGAAGCCAGATTGAAGTGAGGATGAAAAATAGC
TCAATGAAAACTGCTCCGAATGGAAGAATCCCACCAATAAGAATGGTAAAGGCAGGGTTCATGTACCCAGCCTGCTCTGGGATCTGTCTCGGGATTTTGT
TGGTCTTCACTGGAGCCTCAATGGCAGGTTTCTTGAAACCAAGATAGCCCCCAACAAAGACAAGTGGAACCGAGATACCGAACCAAAGAAGCACCAAGGC
AAACATTGTGGAGAAAGGGACAGCACCTGATGATTTCTCCCCCCATATAAGAGCATTCAAGACGAAGAAAATACCAAAAGCAATTCCCGGAAACAGGAAA
GCAGTCTTCAAGGTGATGCTCTTCCATTCTGATCCTTTAAACATCTTATAGAGTCGGGAAGAAGCATATCCAGCAAACAGCCCCATCAAGACCCAAATGA
GCAGCATCGCAGTCATCAATCCTCCACGGTTTGATGGAGAAAGGAAACCCAAGACAGCAAACATCATGGTAACCAGCAGCATACCAAAGAACTGGACACC
AGTGCCAACATAGACACAGAGTAAGTCAGAGTTAGTTGGTGGGCGGAACACATCTCCATGAACAAGCTTCCAACCAGTTTCCTCCTGGGCTTCTTCTTCA
GTCTCAAGTTGATTGTACCTGGAGATATCTCTATATAGAGTGCGGAGCATGATCATGGCCACCATTCCAGATAAGAAAAGCACGATCATGAGAG