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Detailed information on CNT30103076


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000045, E-value = 2e-30

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693619Oryza rufipogonOryza sativa43.7841.7188.64264forward
CNT30674761Oryza rufipogonSetaria viridis33.8384.6595.59204forward
CNT30523103Oryza rufipogonSetaria italica32.3428.8595.38195forward
CNT30315505Oryza rufipogonCorylus avellana32.542.8986.73196forward
CNT30179138Oryza rufipogonSecale cereale31.5123.5494.74190forward
CNT30284074Oryza rufipogonTriticum aestivum31.6731.9995.29191forward
CNT30220711Oryza rufipogonHordeum vulgare31.3418.2492.59189forward
CNT30395424Oryza rufipogonTriticum turgidum30.6838.4694.59185forward
CNT30565715Oryza rufipogonActinidia chinensis29.6822.888.27179forward
CNT3086649Oryza rufipogonVigna radiata20.7316.7684125forward
CNT30554669Oryza rufipogonOryza glaberrima82.5987.6899.6498forward
CNT30172842Oryza rufipogonTrifolium pratense21.8923.8381.82132forward
CNT30435114Oryza rufipogonAegilops tauschii32.3431.0593.85195forward
CNT30244913Oryza rufipogonAvena sativa32.3429.9194.36195forward
CNT30666604Oryza rufipogonTriticum dicoccoides31.3435.8694.18189forward
CNT30447591Oryza rufipogonSaccharum spontaneum31.5134.8694.74190forward
CNT30130711Oryza rufipogonLolium perenne29.5226.1894.94178forward
CNT30129800Oryza rufipogonCorymbia citriodora30.1822.6186.81182forward
CNT30684130Oryza rufipogonTriticum urartu31.6726.3494.76191forward
CNT30722585Oryza rufipogonTriticum spelta32.3426.694.36195forward
CNT30346527Oryza rufipogonEragrostis tef26.3775.3693.71159forward
CNT30363575Oryza rufipogonSorghum bicolor32.3421.1593.85195forward
CNT30596761Oryza rufipogonOryza meridionalis43.2833.0498.85261forward
CNT30369169Oryza rufipogonOryza glumipatula31.6733.3392.67191forward
CNT30149313Oryza rufipogonBrachypodium distachyon19.934.3892.5120forward
CNT30496069Oryza rufipogonDigitaria exilis31.8424.0694.79192forward
CNT30557628Oryza rufipogonPanicum hallii31.5134.1193.16190forward

Expression of CNT30103076

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MDSLRRKRRENHQTPTTLERLRAGELGDGGLLVVPGELGGLAGELLEDVVDERVHD*

>peptide 2 (52 aa)
MVGFLLYLASLAASPASFSKMSLMNEFMIDMALEEIPMSGCTCLSTLKMYIL*

Sequence

>CNT30103076
CACAATTCCACACAAAAATGACGCGAAGAATGATAGTAACAATTTAGCAACCAGAGGTTGCAACCATCACCATTAATTTTAAGATCAGAACTCAACGGGC
ACAACCAAGAGATTCTTACAGTAATCAGCAAGCACTAGACAGGAACACTAGACACAAGAGAAAGAAATCAGAGATCGACAGGGCAACTACCACCGCTGCC
ATGGACTCGCTACGACGAAAACGAAGAGAAAATCACCAAACACCTACTACACTAGAGCGCCTAAGAGCTGGTGAACTTGGTGATGGTGGGCTTCTTGTTG
TACCTGGCGAGCTTGGCGGCCTCGCCGGCGAGCTTCTCGAAGATGTCGTTGATGAACGAGTTCATGATTGACATGGCCTTGGAGGAGATCCCGATGTCCG
GGTGCACCTGCTTGAGCACCTTGAAGATGTATATCTTGTAGGTCTCGACGCTCTTCTTGGCCTTCTTCCTGCCGCGCTCCTTCTTGCCCTCGCCGCCCTT
CTCCCCCTTGGACGCCGGCAGCCGCTTCTCGGCCTTGGGCTTCTTCCCGGCCGCGGGCGCCTTCTCCGCCTTCTCGCCGGCCTTCTCCTCCGCCGGCTTC
TTC