Detailed information on CNT30103059


BLAST search results

BLAST vs Swiss-Prot:
sp|A0A0P0XBU0|CCA1_ORYSJ, E-value = 5e-31

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695228Oryza rufipogonOryza sativa85.2228.2100271forward
CNT30675881Oryza rufipogonSetaria viridis76.7323.5185.66244forward
CNT30523672Oryza rufipogonSetaria italica76.7325.1885.25244forward
CNT30577520Oryza rufipogonOryza barthii56.2924.7999.44179forward
CNT30497933Oryza rufipogonDigitaria exilis62.5818.786.43199forward
CNT30117398Oryza rufipogonOryza nivara104.7258.3294.89333forward

Expression of CNT30103059

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MPCWEESQRGFLEHSQKDFLDLDQEYCRLL*

>peptide 2 (43 aa)
AVYIFLLSSLNICCGKGSTRSWNKWKSYRWRKKREKTLCCPPC*

Sequence

>CNT30103059
GCAGTCTATATCTTTCTCTTGAGCTCGCTGAACATCTGCTGTGGAAAAGGGAGCACTAGGAGCTGGAACAAATGGAAAAGCTATAGGTGGAGGAAAAAGA
GGGAGAAGACCTTGTGTTGCCCACCATGCTGATGCTGCAGCAACTGTAGCTGTGACAATAGATGCCATGTTGGGAGGAGAGCCAGCGTGGCTTCCTTGAG
CACTCTCAGAAAGATTTTCTTGATTTGGATCAGGAGTATTGCCGTCTACTGTAGGCCAGTACGATGCTGCATAGTTGTGAGGAAAGGGCTGTGCTGCGGC
ATTGCCGTCGAATTTTGG