CANTATAdb - search

Detailed information on CNT30103054

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004288, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30695784	Oryza rufipogon	Oryza sativa	80.47	72.34	98.53	408	reverse complement
CNT30117505	Oryza rufipogon	Oryza nivara	43	100	98.17	218	reverse complement

Expression of CNT30103054

Peptides detected in this lncRNA

>peptide 1 (30 aa)
PRNATSLTLSSQAINKHSKYHNRVKVQRGT*

>peptide 2 (32 aa)
PGMRLASHFHRKQLINIASTIIGLKCSEVHDT*

>peptide 3 (37 aa)
MTHNRVRGPNIQHINIAAEVSIRVHNQKIKPVVPQPH*

Sequence

>CNT30103054
CCCAGGAATGCGACTAGCCTCACACTTTCATCGCAAGCAATTAATAAACATAGCAAGTACCATAATAGGGTTAAAGTGCAGCGAGGTACATGACACATAA
TAGGGTCCGAGGTCCCAACATACAACACATAAATATAGCAGCGGAAGTCTCAATTAGAGTTCATAACCAAAAGATAAAACCGGTGGTGCCACAACCCCAC
TAGGGCAAACCAACCGGGCAAGAGCCAAGCCGCAAGAGATCACTCATTGCCCTCGCCGCCCTCGGCAGAGCAATGACCACACAAGAAGCATAACTCAAAA
CCGGATTCCTCTCCTAAAATTGCAGACACCGGGTTAAGTACAAGAATGTACTCGCAAGTCTTACCCAAAATTATATATACATAAGGGAGAGAGAAGTATG
CAAGTTTTATAGCCTATAGGGGGTCTCTAGGTTCAACATTTGCATAAAGCTAATTTTATTGAGCAATTAATGAGTAAAATAAGCAAGGACAAGTAAATCT
ANNNACA