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Detailed information on CNT30103033


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006943, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639555Oryza rufipogonNymphaea colorata93.2384.6693.711446reverse complement
CNT30536068Oryza rufipogonEucalyptus grandis99.6144.8691.721545forward
CNT30513456Oryza rufipogonJuglans regia99.7448.7492.441547reverse complement
CNT30500477Oryza rufipogonCoffea canephora97.6183.1492.61514reverse complement
CNT30269781Oryza rufipogonChenopodium quinoa98.8451.8891.851533reverse complement
CNT30730500Oryza rufipogonCorchorus capsularis74.6697.5693.011158reverse complement
CNT30630109Oryza rufipogonVigna unguiculata100.4549.4391.911558reverse complement
CNT30196858Oryza rufipogonPisum sativum97.5581.4891.011513reverse complement
CNT30503447Oryza rufipogonNicotiana attenuata72.0866.8394.011118forward
CNT3090649Oryza rufipogonSolanum tuberosum99.5556.4793.261544reverse complement
CNT30193801Oryza rufipogonSecale cereale81.5689.5998.181265reverse complement
CNT30291213Oryza rufipogonTriticum aestivum99.6844.597.871546reverse complement
CNT30460907Oryza rufipogonSaccharum spontaneum99.6846.497.991546reverse complement
CNT3017045Oryza rufipogonZea mays99.6857.3497.221546forward
CNT30655263Oryza rufipogonRosa chinensis97.2383.5590.451508reverse complement
CNT30206724Oryza rufipogonHelianthus annuus95.7468.4393.871485reverse complement
CNT30688464Oryza rufipogonTriticum urartu99.6183.9797.861545reverse complement
CNT30720907Oryza rufipogonTriticum spelta66.09100.3997.661025forward
CNT30596725Oryza rufipogonOryza meridionalis99.7444.8398.061547reverse complement
CNT30154922Oryza rufipogonPrunus persica99.4891.3690.281543forward
CNT30410430Oryza rufipogonPapaver somniferum95.150.9992.751475forward
CNT30646402Oryza rufipogonCannabis sativa71.0587.1188.111102forward
CNT30319706Oryza rufipogonAsparagus officinalis99.4853.6994.31543reverse complement
CNT30332807Oryza rufipogonDioscorea rotundata91.3685.7794.281417forward
CNT30148090Oryza rufipogonBrachypodium distachyon92.2649.2697.91431forward

Expression of CNT30103033

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MFSLLKPTFSLPLRRPPLSRLLPSKAERSPTDAF*

>peptide 2 (31 aa)
MDRSPRFGSISSDKLPYEDSLSLRLWWVPFP*

>peptide 3 (55 aa)
MKTRFRYGSGGFRSLNQATAYESPAHSSIGTRSEITFPSHCLGAQHGFTFYFTTH*

>peptide 4 (35 aa)
HTSALQRLVLGPRLEAFSLPLLTLKKHGHLVSLNL*

>peptide 5 (44 aa)
MFQFARLSLACSWIQQAVQKVDLFGNLRIYAYFQLPKAFRRLLRC

>peptide 6 (42 aa)
SYFSAAALGTRTSARGIFSTPSYPEKAWSPCVLKPITIFRLT*

>peptide 7 (54 aa)
MSSQLLCLNAFRGEPASSGFKWHFTPNHNSSADSSTSVGSDLCLVSSKLHPGHG*

Sequence

>CNT30103033
TCATACTTCAGCGCTGCAGCGCTTGGTACTCGGACCTCGGCTCGAGGCATTTTCTCTACCCCTTCTTACCCTGAAAAAGCATGGTCACCTTGTGTCCTTA
AACCTATAACCATCTTTCGGCTAACCTAGCCTACTCCGTCCCTCCGTACCAACAAGGGGTAGTACAGGAATATTGACCTGTTGTCCATCGACTACACCTT
TCGGCCTGATCTTAGGCCTTGACTCGCCCTCCGTGGACGAACCTTGCGGAGGAATTCTTGGTGGGTTTTCGGGGCATTGGATTCTCACCCATGTTTTCGT
TACTCAAGCCGACATTCTCGCTTCCGCTTCGTCGACCCCCGCTTTCGCGGTTGCTTCCCTCTAAGGCGGAACGCTCCCCTACCGATGCATTTTGACATCC
CACAGCTTCGGCAGATCGCTTAGCCCCGTTCATCTTCAGTGCAAGGGCGCTTGATCAGTGAGCTATTACGCACTCTTTAAAGGGTGGCTGCTTCTAGGCA
AACCTCCTGGCTGTCTTTGCACCCCCACCTCCTTTATCACTGAGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCGACGATGAAG
CTTATCCCCCATCGTCTCACTGGCCGACCTTGACCCCTGTTATTTTTGGGTCATATCTAGTATTCAGAGTTTGCCTCGATTTGGTACCGCTCGTGCAGCC
CGCACCGAAACAGTGCTTTACCCCTAGATGTCTAGTCAACTGCTGTGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCAAGTGGCATTTCA
CCCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCTGCTTAGTTTCATCCAAGCTTCATCCTGGTCATGGATAGATCACCCA
GGTTCGGGTCCATAAGCAGTGACAAATTGCCCTATGAAGACTCGCTTTCGCTACGGCTCTGGTGGGTTCCGTTCCCTTAACCAAGCCACTGCCTATGAGT
CACCGGCTCATTCTTCAATAGGCACGCGGTCAGAGATCACTTTCCCCTCCCACTGCTTGGGAGCTCAGCACGGTTTCACGTTCTATTTCACTACCCACTA
GGGGTTCTTTTCACCTTTCCCTCACAGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCC
ACGTGCCCCATGCTACTCGGGTCAGAGCGTAAGCTAGTGATGCTTTCGGCTACTGAACTTTAGCCATCTAGGGTGCGGCACTCAACCGCTTCACCTAGCA
GCACAACGCTTGTATTGCTCTCCCACAACCCCGTTTTCACGGTTTAGGCTCCTCCCATTTTGCTCGCCGCTACTACGGGAATCGCTTTTGCTTTCTTTTC
CTCTGGCTACTAAGATGTTTCAGTTCGCCAGGTTGTCTCTTGCCTGCTCATGGATTCAGCAGGCAGTTCAAAAGGTTGACCTATTTGGGAATCTCCGGAT
CTATGCTTATTTTCAACTCCCCAAAGCATTTCGTCGCTTGCTACGCTGTCA