Detailed information on CNT30103028


BLAST search results

BLAST vs Swiss-Prot:
sp|Q84PD8|SAP11_ORYSJ, E-value = 9e-87

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30117496Oryza rufipogonOryza nivara10.1828.11100260forward

Expression of CNT30103028

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MRAVGPSEARRRWGSAKDPPPPPLRGEERSPGIFCEGVS*

>peptide 2 (56 aa)
MPGELIQSGSTTNGWLQVASMIELSGQFTTNGGKKKEEIIKRKMPLAQADNNALHR*

>peptide 3 (32 aa)
MGATGWVWLWLWGSLSYGLREEENDARACVRAL

>peptide 4 (33 aa)
MSTRGGQFAAVLGGINTIFNQFEYRTVTYLKKI*

>peptide 5 (33 aa)
MFNPKIFGGCFIQIDFKSLIELFFHRIIIWIIY*

>peptide 6 (38 aa)
MAMLPLSRSPCLTVKRGEKKWGRQVGFGCGCGGLFLTD*

>peptide 7 (30 aa)
MMNCELKFGLKEETKCVNKCRHVVVNLQPY*

Sequence

>CNT30103028
TGTGAAAAAACAAAAAAAGTTGTAGTTGAAAAAAATATGGTTAAGAACGCAAAATAATTTGTCAATCAACTCCCACAAACAAGGAACGAGTCCAAAGCAA
CTCACGCGCTTGGATCACTCGCGAAACGACCTATCAACATCTCAAAACTCTCAAACCAATCGAGAGAACGAACGCAAAATTTGCCCATAAATAAATTTAT
TTGCTCCAGCTAAGACCGGCGGCTGATCGATCGAGCTCATCACCACGGGAAAAGCCGATCGCGGAAGAGAAGAGAGCCCTTCCAGCCTGGGCCACGTGGC
GTCCACGCACCATCACCAGCACAAGGAAGGAAGGAGAAAGAAAAAAAAAAAGAAGAAGAAAATCTCCTCGTGCTGCTGCCGACCTGTGCCGGCGATGAGA
GCAGTGGGCCCCAGTGAAGCACGGCGGCGGTGGGGATCGGCGAAAGATCCTCCGCCTCCGCCTTTGCGAGGGGAGGAAAGGTCGCCGGGGATTTTCTGTG
AAGGCGTATCCTGACGACCACCTTAAGCTGTCGACCTGCTTATGTTTAATCCAAAAATTTTTGGGGGATGTTTCATCCAAATCGACTTTAAATCCCTGAT
TGAATTATTTTTTCACAGGATTATTATATGGATTATCTACTAAATTATGTATTATATATTTTAAAATAAATTTAACAAATAGTTTAGAAAAAAATTGTCT
AAGCTGTATGGTAGAAGAAAATATTCTGAGAGGGCATATTTTAAAACGAATTTCTTGAAGCTTGATTTTTTTGTATTAATTTTAATGGATAGTAGCATTT
GTTTTCGTGTTAATCATGAAATGGGAGTCATGCAACTAAAGCACAACTAGTTCCAAAATCAAATTCTAAATTTCAAAATCAGCCTACAGTGAAAAAAAAA
CTGAATTGATTTCCATTTCTTGTTTTTATTCAATAGATGGTGAATTGCACGCATGTATATAATCATTTTTCTGTTTGTAATGTGTTTTGGAAAAGGAAAA
GATGATGAATTGTGAGCTGAAATTTGGTCTGAAAGAGGAAACCAAGTGTGTGAACAAATGTCGACACGTGGTGGTCAATTTGCAGCCGTATTAGGTGGTA
TCAATACGATTTTTAATCAATTCGAATACAGGACGGTTACCTATCTTAAAAAAATTTAAAAAAAGAACAGGGAAATAATTAGTGTACGCAACTTGGACCT
ACCAATAATGCCAGGCGAACTAATCCAATCCGGTTCAACTACTAATGGATGGCTCCAAGTAGCGTCAATGATTGAGCTGTCAGGGCAATTCACAACCAAT
GGAGGAAAAAAAAAAGAGGAGATAATAAAAAGAAAGATGCCACTAGCTCAAGCTGATAATAATGCTCTCCACAGATAATAATAAATTTTATACAAAAGGG
AATTAAAATTAAATAGAGATTTGTGGGAGGACAACACAACAACCCCATCTTCTTCCTTCCTCCCTCTTTCCATCCAACTTCCAACCTCAACCACCACTAC
AACAACAACATCATCATCATCATATTGTTCTTCCTTTGCTTGATGCATCTTGAGTCACCCATCTCATCTCCTTTTCTTTTTCTTTCTTTTTTTTTCCCCT
TTCACCTTTAAGAAGCTCTCAGGAAAAGAAAAAATAATACCCTCAACTTTAATTTTTAAAAGGAAAGAAGAAGAAAAAAGAAAGAAAAAAGGAGGAAAAT
TCAGGTTGGTTTCCCCTTGTATTATCCTTTTAGAACCTAACGATCTTGGCGGCGCGGACGACGGGGTTCTCCCTGGCGATGGCGTCCCTCGCCGCCGACT
TGTAGTCGAAGCTGCAGTCGTGGCGGTCGGAGTACCGGTGCGCGCCGCAGTAGAGCTCGCCGCAGCGGCACCGGAACCCGGTCAGGCCCACCCGCCTCCG
GCAGCTGTGGCATCGGTTGACCGACGACGACCTCGACGCCTTCGACGACGACTCCACCGGCCCCGCCGTCGGCCGCTCAACCACCAGCGCCACCGCCGCC
GCCGCCGACGACTGTACGGCCTGCCTCGGCTTCTCCACCACCGGAAACACCGGCAACGACGTCGTCGACGGCGAGGCAGCCAAGAAGCAGTTCTGGCAGA
GGTTGTTGGTCGCCGGGTTGCCCGGGAACCCGCAGCTGTTGGCGCAGAGCGTCATCTCCGGCGCCCTCAGCTCCGTCGGCTCCTCCACCTTCTTCTCCCT
CTGCGCCATGATCGAATCCGAGAGAGAGACGAAGCGAGCTTAGGTTCGCTTTGCTTTTGGGAATGGGTTAGCGAGGCGAGGCGAGGCGAGGCGAGGAGAG
GGTGAGTCCCTTTTATTTATCGAGGAGGAGGCGGGCGGCGTACGCGTTCTCGTCGTCGACAGACAGCGACGGCCGGCGCTTGAAAATGGGTTGGAAATGG
CGATGCTGCCCCTCTCTCGATCACCTTGTCTGACGGTGAAAAGAGGAGAAAAAAAATGGGGGCGACAGGTTGGGTTTGGTTGTGGTTGTGGGGGTCTCTT
TCTTACGGATTAAGGGAGGAGGAGAATGATGCAAGGGCGTGCGTACGTGCTTTGT