Detailed information on CNT30103018


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695623Oryza rufipogonOryza sativa77.8336.64100927forward
CNT30106486Oryza rufipogonOryza longistaminata77.7589.1296.33926forward
CNT30577336Oryza rufipogonOryza barthii77.8342.1799.89927forward

Expression of CNT30103018

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MNFMFVNQVCVTVQVACLAHLVSIMSWLLAANSLHEHVV*

>peptide 2 (39 aa)
MSWRRETTCYNSASQFASRGDVMRFQALRRLSLLLQPTA*

>peptide 3 (36 aa)
MIPRAVQISDALGLTESHCHVPVIGSRNQHGSLFYY*

>peptide 4 (33 aa)
MFQLLAAGISMAAYSITEPCHTCMLQHPFNGDC*

>peptide 5 (45 aa)
MEIANQLVLVPCVLLHLIAEQFINNYLVIWGAKDLVPVPVSCEYW*

>peptide 6 (58 aa)
MGLMSLPRKRTRAVPLLGQATVDFTSMMCSYLVRSSCSITSLACLLHSQHSASAAISR*

>peptide 7 (53 aa)
MSSSSCVYHVLAIGSKLIARACSLNLDPDPDHGIDELATKENKSCSFARPSNS*

Sequence

>CNT30103018
GAAGAAGCAGAGGCAATGGCATCTCTACTCTGTAGACAGCATTGGAATCTCAATTACATTTAAGTAATGTGCTGCTGCAACGGATGCCACCCATCTCCTC
GACAAGCTGATGAATTTTATGTTTGTTAATCAAGTGTGTGTAACAGTGCAAGTGGCATGTCTAGCTCATCTTGTGTCTATCATGTCCTGGCTATTGGCAG
CAAACTCATTGCACGAGCATGTAGTTTAAATTTAGATCCAGATCCAGATCATGGGATTGATGAGCTTGCCACGAAAGAGAACAAGAGCTGTTCCTTTGCT
CGGCCAAGCAACAGTTGACTTCACCTCCATGATGTGTTCTTATCTGGTACGTTCTTCGTGCAGCATCACATCGCTGGCCTGCCTTCTGCACTCACAGCAT
TCAGCATCTGCTGCAATCTCAAGATGATTCCACGTGCTGTCCAAATTTCTGATGCATTAGGCCTAACTGAGTCACATTGTCATGTTCCAGTTATTGGCAG
CAGGAATCAGCATGGCAGCTTATTCTATTACTGAGCCTTGTCATACGTGTATGCTCCAGCACCCATTTAATGGAGATTGCTAATCAACTAGTATTGGTGC
CATGTGTGCTATTGCATCTGATTGCTGAGCAATTTATCAACAACTATTTAGTTATATGGGGAGCAAAGGATCTTGTGCCTGTTCCTGTCTCATGTGAATA
CTGGTGACATGACCATCCCATGGCTTTACGAAGGCAAGGTGAAGCGCTCCAAATGTCCGGTGATTGTTTGAGAGCAGTATGCGTCAAGTGAAGGGGGAAA
TTAGAGGCAAAAGAGTGAAATATTCATTGAATGAACTCCTGTACATTTCCTCATGTATGATGTAGGTGAACATACAAAATTGTTTTGGTGATCAACAAAT
CCTCTAATAGGCGGACGCCAATCACAGATAATTCTTCTCTTTTGGAATGTCTTGGAGACGAGAGACCACTTGCTATAACTCGGCATCACAGTTTGCTTCG
AGAGGAGATGTGATGAGATTTCAAGCATTGAGAAGGCTGTCTCTCTTGCTTCAGCCAACAGCTTGACCACCCTGCAGCTCTCCTGATCAGAGGTCAAGCA
AGACGAGAGAGCACTCGAGCTCTTGCTCCACTGCTTTCCTGTTCTGTGACTGGCAAAGGAGAACTTGGCTGCTAGGCATGCACATGATCTC