CANTATAdb - search

Detailed information on CNT30103017

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT001107, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30695341	Oryza rufipogon	Oryza sativa	86.22	100	100	588	forward

Expression of CNT30103017

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MLFLTLLVVLRKNNLLVSSTHSCTLLCTFKLPCNPSLKAPVLLT

>peptide 2 (94 aa)
MVASNFRAFFDSVDKEALSGKFGVTFLVMRLCSFLSGIALSTTKVFSDLETLGREDSIVTESCQGISSLEPSSMFSGLISLLATLNGAGTACAD*

Sequence

>CNT30103017
TCACATGCATGAATAAAGCCTTTGTACTTTGTAGTAAGCAATTTAACAACACTCCTAGCTGACTCAACATTGTCGACAACCAAAACTTTGTCATAGATGG
TAGCAAGCAACTTCCGTGCATTTTTTGACTCAGTGGACAAGGAAGCTTTGTCCGGGAAATTTGGCGTCACCTTCCTTGTAATGCGTTTGTGCTCCTTTTT
GTCTGGGATAGCTTTATCAACCACCAAAGTTTTCTCTGACTTGGAAACTTTAGGCAGAGAAGATTCCATCGTAACGGAATCGTGCCAAGGAATTTCCTCC
TTGGAGCCATCAAGCATGTTCAGTGGTTTGATATCATTATTAGCAACACTGAATGGGGCAGGCACAGCATGTGCTGACTGATACATCACACGATGCTTAG
CCAAATCTGTATCGACATGTCTATTTACAATTGAATTAGATGGCCCTCTTTCTCTTTGATTATACAAGGAAGGATAGTTTGAACTCCTGATATCTTCTGA
GGGATCATGACGCAGATTTCCAACCCGCAGAGGAGTAGTGCCATTAGTGATGTTGTTCCTGACATTGTTGGTGGTCCTGAGGAAAAATAACCTCTTGGTT
TCATCAACCCATTCTTGCACGCTACTTTGTACATTTAAGTTGCCATGCAATCCCAGCCTGAAAGCACCAGTTTTGCTAACCC