Detailed information on CNT30103007


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006895, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690379Oryza rufipogonOryza sativa56.8167.4393.07938forward
CNT30553060Oryza rufipogonOryza glaberrima42.9426.2892.38709forward
CNT30130271Oryza rufipogonLolium perenne5.6326.1286.0293reverse complement
CNT30597095Oryza rufipogonOryza meridionalis23.3256.8792.99385forward
CNT30117531Oryza rufipogonOryza nivara64.0210099.531057forward
CNT30550983Oryza rufipogonOryza brachyantha15.3877.9188.98254forward

Expression of CNT30103007

Peptides detected in this lncRNA

>peptide 1 (65 aa)
PSQIPVRSSQSERASYSSCWPAVERDRITLPDEQRWDRSWIVRASVRPADRRGGRELRFWLCSCW*

>peptide 2 (36 aa)
MNMHKIPCWIMVALDIYVLYRWIMGMYLLDCCSWTC*

>peptide 3 (69 aa)
MYSEPAMVVGFRLHIFIIIRLNNNCYMAFKRRSDRVDHMTWNGTCWLSSSFLMVLSCGLRTSANPVSVG*

>peptide 4 (31 aa)
MRPGMKSIGSSHRGKRKVEECFAQIGGTLFF*

>peptide 5 (34 aa)
MLMDWIDWWSSRSYYRCILNLLWWWGFGCTYLSS*

>peptide 6 (48 aa)
MYYTGGLWACICWIAVVGLVEYHSYSSPIYIIPCSVELTIRWRNVLHD*

>peptide 7 (43 aa)
MIRRCCGNHPQRLLPDGIDEKLVTLALPAYTMKCASSADGRGH*

>peptide 8 (66 aa)
HPRFQSDPVKASELATPAAGRPSKETGSLCRMSSGGIDRGLCAPPSVLPTGAAAASLDFGCAPAGR*

Sequence

>CNT30103007
TCCATCCCAGATTCCAGTCCGATCCAGTCAAAGCGAGCGAGCTAGCTACTCCAGCTGCTGGCCGGCCGTCGAAAGAGACCGGATCACTTTGCCGGATGAG
CAGCGGTGGGATCGATCGTGGATTGTGCGCGCCTCCGTCCGTCCTGCCGACCGGCGCGGCGGCCGCGAGCTTAGATTTTGGCTGTGCTCCTGCTGGTAGA
TGAATATTTATCTTGGATTTCATCGAATTCTTCATTGATTTATTCGTTCTTCGATTTCGGGTATCTCAGGCAAGTCCAACACCTTTGATCAACTCTTGTT
ATATTTTTATAATTGCAATCTATATGTATCACCTTGCATTAAATTATATTTTCTATAATTGAAATAAATATGCTGATGGATTGGATTGACTGGTGGAGCA
GTCGGTCATATTATAGATGTATTCTGAACCTGCTATGGTGGTGGGGTTTCGGTTGCACATATTTATCATCATAAGGTTAAATAATAACTGTTATATGGCA
TTCAAGCGTCGTAGCGATCGTGTCGACCATATGACCTGGAATGGGACATGCTGGCTTAGTAGTTCTTTCTTAATGGTTTTATCCTGCGGCTTAAGGACTT
CCGCGAATCCTGTGAGCGTGGGCTAGCGATGAGGGTTGCCGTTGTTGCGGAATCCGATTAGATGATGTGGATCGCCGTTGTTGCGGGATCCGATGATTCG
CCGTTGTTGCGGGAATCACCCGCAGAGATTATTGCCAGATGGGATTGATGAAAAGCTTGTGACCTTAGCCTTGCCGGCATACACCATGAAGTGTGCTTCA
AGCGCCGACGGGCGTGGGCATTAAAAGGTTTAAGGCGTCTGTGGGTACAGCGACACACCTCTGCAGAGTGTATGAATTGTGATATGTCACTCCCTGTTTC
GGGTAGAAACTGCGAACACGGCAGGAAAGGAACCTATCGGAGGTTCTAATACTTGTGGTGCCTTATATACAGTAGATTTTATAATTACTTAATATGAGTT
TTTACAACACTGTTTTATGAACATGCATAAAATTCCTTGTTGGATTATGGTGGCTTTGGACATATATGTATTATACAGGTGGATTATGGGCATGTATTTG
TTGGATTGCTGTAGTTGGACTTGTTGAGTACCATTCGTACTCATCCCCTATATATATTATTCCTTGTAGTGTTGAGCTAACAATTAGGTGGAGAAATGTT
CTACATGATTGATCAAGATCAAAGCAAAGAATCGTTCCATATTTCTACATCAACTGAGAGTTGAAGGTGACGAAGGTATAGAGTAGCAAGTTTGATAGCT
AAAACAAATGAGGCCAGGAATGAAGAGCATAGGCTCCAGCCACAGAGGGAAAAGAAAGGTTGAGGAGTGCTTTGCGCAGATTGGGGGGACTCTCTTTTTC
TAAATGATTTAGTTGATGACCAAATGTTTTTTTTCTCAGATTACTATATTTGTTTTTTAATTTTTAAGGCGTGACATATCACAGGTTATGATTTTTCAAT
AAGTAGATTTAATGGCTGAAAAAAAATTTAAGTGAAAACCGATGATAAGATGTTTTGTGCTTTCCTTTTAATTTCTAAGTTTTTTCTAATTTTCAAATGT
GACATATGGTGACTTAATAGCGCTATGACACATAGTGACTCCATATTTTTC