CANTATAdb - search

Detailed information on CNT30103001

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006895, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30695707	Oryza rufipogon	Oryza sativa	82.38	83.98	100	561	forward
CNT30108239	Oryza rufipogon	Oryza longistaminata	25.4	23.38	99.42	173	forward
CNT30577269	Oryza rufipogon	Oryza barthii	27.17	46.02	99.46	185	forward
CNT30117528	Oryza rufipogon	Oryza nivara	82.23	86.55	99.64	560	forward

Expression of CNT30103001

Peptides detected in this lncRNA

>peptide 1 (65 aa)
PSQIPVRSSQSERASYSSCWPAVERDRITLPDEQRWDRSWIVRASVRPADRRGGRELRFWLCSCW*

>peptide 2 (31 aa)
MRPGMKSIGSSHRGKRKVEECFAQIGGTLFF*

>peptide 3 (79 aa)
HPRFQSDPVKASELATPAAGRPSKETGSLCRMSSGGIDRGLCAPPSVLPTGAAAASLDFGCAPAGSVELTIRWRNVLHD*

Sequence

>CNT30103001
TCCATCCCAGATTCCAGTCCGATCCAGTCAAAGCGAGCGAGCTAGCTACTCCAGCTGCTGGCCGGCCGTCGAAAGAGACCGGATCACTTTGCCGGATGAG
CAGCGGTGGGATCGATCGTGGATTGTGCGCGCCTCCGTCCGTCCTGCCGACCGGCGCGGCGGCCGCGAGCTTAGATTTTGGCTGTGCTCCTGCTGGTAGT
GTTGAGCTAACAATTAGGTGGAGAAATGTTCTACATGATTGATCAAGATCAAAGCAAAGAATCGTTCCATATTTCTACATCAACTGAGAGTTGAAGGTGA
CGAAGGTATAGAGTAGCAAGTTTGATAGCTAAAACAAATGAGGCCAGGAATGAAGAGCATAGGCTCCAGCCACAGAGGGAAAAGAAAGGTTGAGGAGTGC
TTTGCGCAGATTGGGGGGACTCTCTTTTTCTAAATGATTTAGTTGATGACCAAATGTTTTTTTTCTCAGATTACTATATTTGTTTTTTAATTTTTAAGGC
GTGACATATCACAGGTTATGATTTTTCAATAAGTAGATTTAATGGCTGAAAAAAAATTTAAGTGAAAACCGATGATAAGATGTTTTGTGCTTTCCTTTTA
ATTTCTAAGTTTTTTCTAATTTTCAAATGTGACATATGGTGACTTAATAGCGCTATGACACATAGTGACTCCATATTTTTC