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Detailed information on CNT30102990


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6YUE5|Y8187_ORYSJ, E-value = 9e-122

BLAST vs NONCODE:
NONORUT006688, E-value = 3e-132

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695757Oryza rufipogonOryza sativa44.6890.9199.12340forward
CNT30370843Oryza rufipogonOryza glumipatula80.1670.3698.85610forward

Expression of CNT30102990

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MFSPAATLKSSTQAFRFGSPLPAPPWTLRNWST*

>peptide 2 (32 aa)
MLPKIVDNTTNRSWELTTSIINKIMYFHLVGS*

Sequence

>CNT30102990
GCCTATATATAAGAAAGAACTGAGGAATTGTATGTATGAAGTTGAATGAAAAAATGATATATAATGTAGAATTGAGAGTTGGGAATATATGAAATAGAAA
ATTGAGAAAAACAATGTTACCAAAAATCGTGGACAACACCACTAATCGATCATGGGAATTAACAACAAGTATAATAAATAAAATAATGTACTTCCACTTA
GTAGGTAGCTAGAGAGCATGCATGGAAGTCTATATATATAGCTGGATTATTAAAGCTTTATGTGATTGATGAGGGAGCTAGCTGTGTCGAAAGTATATCC
AAGGGTTTTCTGGGCGGGGAGATCATCGCTATAAGTGAACAGGTAACCTATCTCGCAACCGGATGCTTTCCCGATCCCACCGTTGTAGGGTTTCTCCACC
CCTTTGATCCACTTTTGCGCATTCTCCAGATCCTCCTTGCTGCGCTTGCCATTTCCGGCGGCGGCGAGGCGGCCGAGGCTCTGCAGCGCCTCCCTGGTGA
TGTTCTCGCCGGCGGCTACGCTGAAGTCATCGACGCAGGCGTTCAGGTTCGGGTCCCCCTTGCCGGCCCCTCCCTGGACCTTGCGCAATTGGTCGACGTA
GACCCAGAGGTTGGTGCTCAGGATGGTGGCGGCCACCTCGGCGACCTTCACCTGGTTGCCCTCGAAGAAGGCAGCGTAGGGGAGGAGATGGTAGTAGCAG
AAGCTGGAGCCGTCGCGGTCGGCCTGCAGGGCGGTGTCGCAGCAGGAGCGGACGAACGCTG