Detailed information on CNT30102982


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6YZA9|GL82_ORYSJ, E-value = 8e-62

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30297939Oryza rufipogonTriticum aestivum3325.6582.8399forward
CNT30223471Oryza rufipogonHordeum vulgare32.6719.7685.7198forward
CNT30240671Oryza rufipogonAvena sativa5119.5982.35153forward
CNT30665054Oryza rufipogonTriticum dicoccoides5118.1982.35153forward
CNT30469790Oryza rufipogonSaccharum spontaneum5114.3783.01153forward
CNT30140763Oryza rufipogonLolium perenne29.6731.7986.5289forward
CNT307812Oryza rufipogonZea mays279.5685.1981forward
CNT30688822Oryza rufipogonTriticum urartu61.6723.181.08185forward
CNT30573105Oryza rufipogonVitis vinifera2411.986.1172forward
CNT30646121Oryza rufipogonCannabis sativa21.675.7187.6965forward
CNT30117328Oryza rufipogonOryza nivara49.6732.1883.89149forward
CNT30726724Oryza rufipogonLupinus angustifolius22.3314.1486.5767forward

Expression of CNT30102982

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MATAGLCGLGLNWKWMSPSGNTNTVKISVARGCVCGGFKPKGAKSRRAIEMPRVLRP

Sequence

>CNT30102982
AGCAAATCTATGATCTTCTTATCCACCTGAAACGCCTTCATCAAAATATCATCTGAGATAGGTGGGTTCGATCCAAACACCGCATTGGCAATAGTAATAA
CCCCGGGATTTTGGCTACTCAGTGCAGCAATGGCAACTGCCGGCTTGTGTGGGTTAGGATTGAACTGGAAGTGGATGAGCCCCTCAGGGAACACAAACAC
CGTGAAGATCTCGGTTGCACGAGGGTGCGTGTGTGGTGGGTTCAAACCCAAGGGTGCAAAGTCAAGACGTGCTATCGAGATGCCAAGGGTATTGAGACCA