Detailed information on CNT30102962


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT001090, E-value = 3e-161

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695704Oryza rufipogonOryza sativa100.0758.3999.421388forward
CNT30555812Oryza rufipogonOryza glaberrima19.543498.89271forward
CNT30150013Oryza rufipogonBrachypodium distachyon7.1424.5787.8899forward
CNT30577568Oryza rufipogonOryza barthii27.5481.4599.48382forward

Expression of CNT30102962

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MYSLAGQSLVNFFVHAFVLVLWKKRLAKRREKSKTHIILSTYIILKF*

>peptide 2 (40 aa)
MLRKPCKEKELYFKEGKQKKLLFGTKDSTLTSAIYYTTFY*

>peptide 3 (63 aa)
LSPRSGGLAGRRLPEPPALPSPAGGKPPLSLVERGVDRGMRVEGGPAAERGMNAVGDADGGGG*

>peptide 4 (35 aa)
LSSLRRVGRSPVAGAACPALSGRREAAIIAGGTRR*

>peptide 5 (51 aa)
SLLAPAGWPVAGCRSRLPCPLRPAGSRHYRWWNAALTEGCGWRAARPQNGG*

>peptide 6 (47 aa)
MQYCHYCLLMYRVGASYFRLANISFVTLMATCRPMQPFYVACLLASI*

>peptide 7 (63 aa)
MQRKGTILQGRQTEEVTVWNKRFNLDLSNILHHFLLRKKRMLSQISCEQLTESHCVIINFTFT*

Sequence

>CNT30102962
CTCTCTCCTCGCTCCGGCGGGTTGGCCGGTCGCCGGTTGCCGGAGCCGCCTGCCCTGCCCTCTCCGGCCGGCGGGAAGCCGCCATTATCGCTGGTGGAAC
GCGGCGTTGACCGAGGGATGCGGGTGGAGGGCGGCCCGGCCGCAGAACGGGGGATGAATGCGGTAGGGGACGCCGACGGCGGCGGTGGCTAGGGTTGGCG
AACTCACTGCTGCTCTCCTTCGATCGCGCCGCCGTTGCCCGTCGTCGAGTTGGGCGACGACCAGGGGCAGGGACAGGTTAAGGAGTTCATCTCCTGCGTG
AAGTAAAGGGCTGCCTTGTCCAAACTTTGTTCCTAATTAGCTAAGCTCTATGTTGACTTGTCCCTGATTGACAACTTGACAGCAAGTTGGTTGAAAAATG
TTACGGAAGCCATGCAAAGAAAAGGAACTATACTTCAAGGAAGGCAAACAGAAGAAGTTACTGTTTGGAACAAAAGATTCAACCTTGACCTCAGCAATAT
ACTACACCACTTTTTACTGAGAAAAAAAAGGATGTTGTCACAAATTTCTTGTGAACAACTCACAGAAAGTCACTGCGTAATAATTAATTTCACTTTTACT
TAAAAGAAAGAGGCTGACACAAAGTTCTTGTGACAAATCCTGATATGTCAATGTTGAGAGGGTGCTCATGAATTTCCTTATCATGAGATAGCCTAAATAT
TTTTTTTACAAAAAGAAATATGTAAGCTCTGCCTCGTTTCATCCAAAAAGAGATAGTACACTAATAATGCGGAGGGGACAATAGAATCAAAGCAGATTAA
GGACCTAGAAATTGTTTCATCAAAGGGCTAAATGACAGAATTCATATAGTAAAGAGACCAATTCTTCGTACGTGTAGAATCGATTGGGATAACTAACTGG
CCAAAGCAACGTACTGAGTAAATGTCGTCATGGACGGCAGGTTAAACAATTTAATCTAAAACAACTGCAATTAAGCATGCAGTACTGTCACTATTGTCTA
TTGATGTACCGTGTTGGAGCTAGTTACTTCAGACTTGCAAATATTAGTTTTGTCACCCTAATGGCGACATGCAGACCAATGCAACCATTTTACGTGGCCT
GTTTGCTTGCTTCAATCTGACATTCTGACCTATGCTTGTTGCTTTGATGTCACTAGTAGCTAACTAAGTAGTATATTCTTTGCTGCTAGTGTAGCTTTTT
GAACCTATATATTATTTACCAGGAAGTAATCAAGATGTATTCATTAGCTGGTCAGTCACTAGTTAATTTCTTTGTGCATGCTTTTGTATTGGTGTTGTGG
AAGAAAAGATTAGCTAAGAGAAGGGAGAAGAGTAAAACCCACATTATATTATCAACTTACATTATTCTAAAATTTTAACTAGTCCTC