Detailed information on CNT30102953


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30596683Oryza rufipogonOryza meridionalis15.4759.7397.25218forward
CNT30604441Oryza rufipogonOryza punctata8.1622.0792.17115forward

Expression of CNT30102953

Peptides detected in this lncRNA

>peptide 1 (60 aa)
PTRIYKLCRLRRMLSFLPSLMSDTSISLGDLNTSCITPYVRVKMDSDDALARASIRLHRV*

>peptide 2 (43 aa)
MYRVFVLLICSTVLYNALKISWLIFVQTRFRKKERKKETIGSK*

>peptide 3 (70 aa)
MHARSSHCLKAYSIVHYFFTYFLIYSNKLTNNRLSSLFFSDMYPHALLTWDVVQNRMPPLHKTVDHIYHL*

>peptide 4 (67 aa)
MWFKTGCRRYTRRSTIYIIFRPNIYYMCPSKNTFFFFANYKLACICNKFVFLIDKIHSHLFFPCHRH*

>peptide 5 (34 aa)
MHFTVQRKRHACKIFSLSQSIFDRTLLLHLLFNI*

>peptide 6 (31 aa)
MSSSLRLQNILVNKKRNRSCLHVSCIRVVNL*

Sequence

>CNT30102953
CCCACACGCATATATAAATTGTGCAGGTTGCGAAGGATGCTTTCCTTCCTTCCCTCCCTGATGAGCGATACTTCGATATCGCTAGGAGATTTAAACACAT
CATGTATTACTCCGTACGTACGTGTGAAGATGGATAGCGACGATGCATTGGCTCGTGCATCAATTAGGCTCCATCGAGTTTGATCGTTAAGATAAATGTC
ATATTAACCAGCTGTATGCACTTCACAGTGCAGAGAAAGCGACATGCATGCAAGATCTTCTCATTGTCTCAAAGCATATTCGATCGTACACTACTTCTTC
ACTTACTTTTTAATATATAGTAACAAATTAACTAACAATCGACTATCCTCTTTATTTTTTTCAGACATGTATCCGCACGCATTATTAACGTGGGATGTGG
TTCAAAACCGGATGCCGCCGCTACACAAGACGGTCGACCATATATATCATCTTTAGGCCAAACATATATTATATGTGTCCTAGCAAAAACACATTTTTCT
TTTTTGCAAATTACAAGCTAGCATGCATATGTAACAAATTCGTTTTCTTAATAGATAAAATTCATTCGCATTTGTTTTTCCCATGTCATCGTCATTAAGA
TTACAAAACATTTTAGTGAATAAAAAAAGGAACCGCTCCTGCCTGCATGTATCGTGTATTCGTGTTGTTAATTTGTAGTACTGTACTATATAATGCTCTG
AAGATCTCTTGGCTAATATTCGTACAGACCAGGTTCAGAAAGAAAGAAAGAAAGAAAGAAACCATCGGCAGCAAATAATACACCCCGCGCGCCAGGGAAG
ACGACGATGATGTGAGTGCTGCTTGCATTGCGTGCAAGTGGCCTCGATCGGCGCCGCAGGCGGCCGCTTGCTACATCAAATCAAATACTATCCCTTGTCT
ATTTCAGGTCGTACGTGACACACGTCGAAGCGCATGCGTGCCCTGTACGTGCCGTCTGTCTGTGTCGCAGCTGTCTCCACCACACACACATGTACTCCAC
ACATCGATGGCCTGATCTGACACGCATCGTCGTCGTTGCCGTACCTGTCAACTCCTAGCGTGGACGCGCGCTCTCTCTCTCTCTCTATCTGTGGCAGCGC
ATATATCTGCAAAATCATCATTGTCAAGAGCAAACGCGTTCCTATCTGCAAATTGCTACTAGTACAGTTTAATTAACTCCCAACGTAATTAGGTCCCGTT
TGATTTAGCTTAGGATTATTATAGTCTAGATTATTAGCAGTAAGTTAAAACAAACAAGTAGATTATTATGCTAGATTATTATAATCTATAAGCTAGATTA
GTATAATCCAATAATTTTCTCTGGATGAGCTTTTTTTAAATTATTGAGTGGTTAAAGATCCACCACCCTTAGATGCCTCTTATAATCCAGAGAAACAAAC
AACTCGCAG