Detailed information on CNT3010293


BLAST search results

BLAST vs Swiss-Prot:
sp|P10979|GRPA_MAIZE, E-value = 4e-29

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678707Zea maysSetaria viridis38.4229.5785.29136forward
CNT30521923Zea maysSetaria italica51.4131.1684.62182forward
CNT30447360Zea maysSaccharum spontaneum47.4631.8292.26168forward
CNT30578989Zea maysEchinochloa crusgalli49.7224.7588.64176forward

Expression of CNT3010293

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MLRPSSSLPFMFSIASSMEFSEEKAFSSDSLLVAQASPPTKQRYSTSAAAIAPPQNPKEP*

>peptide 2 (37 aa)
HRRHNRRHGARHHNRRRRRDRRRSHRRHRHRHGTGPG*

>peptide 3 (97 aa)
ATAAITAVTAPATITAAAAATAAVATAATATATGLGLVNGDVTAVELLAVHVLDSVEHGVLGGEGILQRLVAGGPGKPADEATVLHISRRHRPSTKP*

Sequence

>CNT3010293
GCCACCGCCGCCATAACCGCCGTCACGGCGCCCGCCACCATAACCGCCGCCGCCGCCGCGACCGCCGCCGTAGCCACCGCCGCCACCGCCACCGCCACGG
GACTGGGCCTGGTTAACGGTGATGTTACGGCCGTCGAGCTCCTTGCCGTTCATGTTCTCGATAGCGTCGAGCATGGAGTTCTCGGAGGAGAAGGCATTCT
CCAGCGACTCGTTGCTGGTGGCCCAGGCAAGCCCGCCGACGAAGCAACGGTACTCCACATCAGCCGCCGCCATCGCCCCTCCACAAAACCCTAAGGAACC
CTAACCCGAGGAGGACTTGGTAAGAGGGGGAGGAGAAGCCAGCCCACCTCTGAG