Detailed information on CNT30102853


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006667, E-value = 3e-149

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696498Oryza rufipogonOryza sativa59.7545.1885.77239forward
CNT30555247Oryza rufipogonOryza glaberrima59.7542.5385.77239forward

Expression of CNT30102853

Peptides detected in this lncRNA

>peptide 1 (46 aa)
FIFLPFLSPLSVSFPSCKLSSLLFSPSPNLLQMKESSPACHTTRSP*

>peptide 2 (73 aa)
MHGLVREIGKKIGRASCGLQQQNNPVFPSLDSENSEYVEQDSEVECVSTQQQVSDVPEESVSVEEGSEAFAEAQ

Sequence

>CNT30102853
TTTCATCTTCTTGCCCTTTCTTTCTCCCTTGTCTGTTTCTTTTCCTTCTTGCAAGCTGAGCTCCCTCCTCTTTTCCCCCTCGCCTAATCTCCTCCAAATG
AAAGAATCGAGCCCTGCATGTCACACCACTAGATCCCCATGATTCTAAGCTTTCCATCCATCCAAACATCTTGCACATGCATGGGTTGGTGAGGGAGATC
GGGAAGAAGATAGGTAGAGCTTCCTGCGGATTGCAGCAGCAAAACAACCCTGTTTTTCCTTCACTTGATTCGGAGAATTCGGAGTACGTGGAGCAAGACT
CAGAGGTTGAGTGTGTTTCCACACAGCAGCAAGTTTCCGACGTTCCGGAGGAGAGCGTTTCCGTTGAGGAAGGTTCCGAAGCGTTTGCGGAAGCCCAAGG