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Detailed information on CNT30102778


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LZI2|UXS2_ARATH, E-value = 5e-41

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30499549Oryza rufipogonCoffea canephora33.9917.5586.0586forward
CNT30177095Oryza rufipogonSecale cereale48.228.882.79122forward
CNT30289293Oryza rufipogonTriticum aestivum48.2240.1395.08122forward
CNT30457070Oryza rufipogonSaccharum spontaneum33.212.3391.6784forward
CNT30134072Oryza rufipogonLolium perenne22.537.8587.7257forward
CNT3066796Oryza rufipogonLeersia perrieri22.5314.6587.7257forward
CNT30718631Oryza rufipogonMalus domestica golden23.3210.2888.1459forward
CNT30339698Oryza rufipogonEragrostis tef49.4110.1284125forward
CNT30363710Oryza rufipogonSorghum bicolor21.749.3794.5555forward
CNT30595456Oryza rufipogonOryza meridionalis22.531089.4757forward
CNT30105598Oryza rufipogonOryza longistaminata32.0211.7687.6581forward
CNT30325711Oryza rufipogonAsparagus officinalis20.5516.388.4652forward
CNT30574680Oryza rufipogonOryza barthii22.536.2287.7257forward
CNT30580197Oryza rufipogonEchinochloa crusgalli33.210.1990.4884forward
CNT30497454Oryza rufipogonDigitaria exilis21.3414.5288.8954forward
CNT30115589Oryza rufipogonOryza nivara22.533.9987.7257forward
CNT30603506Oryza rufipogonOryza punctata28.0614.1491.5571forward
CNT3064271Oryza rufipogonSelaginella moellendorffii35.1816.1885.3989forward

Expression of CNT30102778

Peptides detected in this lncRNA

>peptide 1 (33 aa)
LVRRKRAPTRLARPSMLRVPTTLVLMVLTGLCL*

>peptide 2 (82 aa)
GEEEAGADALGEAEHVEGADDVGLDGLDGVVLVVHGGRRARQVVHHHHAVAARQQPVHQVAPHEPGSPRHHHAEPLLLQPQRH

Sequence

>CNT30102778
CTGGTGAGGAGGAAGCGGGCGCCGACGCGCTTGGCGAGGCCGAGCATGTTGAGGGTGCCGACGACGTTGGTCTTGATGGTCTTGACGGGGTTGTGCTTGT
AGTGCACGGGGGACGCCGGGCACGCCAGGTTGTCCACCACCATCACGCTGTCGCCGCGCGCCAGCAGCCGGTCCACCAGGTGGCTCCCCACGAACCCGGC
TCCCCCCGTCACCACCACGCGGAGCCCCTTCTTCTTCAGCCCCAGCGGCACGC