Detailed information on CNT30102771


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000867, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30115735Oryza rufipogonOryza nivara53.9177.7697.55937forward

Expression of CNT30102771

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MVGNYPEFFSDIRRHNFFGYKKHVYIHNFFIRNQMKTNFISTL*

>peptide 2 (39 aa)
MRSFAPQVWRVPTLEELSRSIEGVKASTRRTYVMDKSCF*

>peptide 3 (54 aa)
ERFSCSPSRRTSCALPPPLLFLSSPAPPLVQPSPVATAVVVRSRSLEGRKEGEI*

>peptide 4 (89 aa)
MKLVRIVSVRPDHFSDSDSFGRNYPEILGFGNEFGYFFSETKTNTVRAISVGIGKWSETIRNFFRISADITFLDIKNTYIYITFSYGIR*

>peptide 5 (64 aa)
SDSPVALAAAPPALCRRRCCSCLRRRRRWCSRRRWPQPSSSAAGRWKEGKKGKFDRRREIWGIW*

Sequence

>CNT30102771
GAGCGATTCTCCTGTAGCCCTAGCCGCCGCACCTCCTGCGCTCTGCCGCCGCCGCTGCTGTTCCTGTCTTCGCCGGCGCCGCCGCTGGTGCAGCCGTCGC
CGGTGGCCACAGCCGTCGTCGTCCGCAGCCGGTCGTTGGAAGGAAGGAAAGAAGGGGAAATTTGATAGAAGAAGGGAAATTTGGGGAATTTGGTGAATAT
TTCTAAATTCTTCGTTTTTCTTATACATTAGTACTGCTAGGTAATCCGTTTTAGTCTATAGTTGTTTCTAATTTATATTTAAGAAGATCTGTTTCCGTTT
TTTTCGAATTTATTTTATATCGAACGCTAGGCTGAAACCGTATTTTCAAATCTGGTATTAAACCATCAGGAATCAGGTTAGTTGTCCTAAATAAAGTTTG
TAGTCATTGTCGATATCTTTCCAACGGTGCTAGTTTCACTCGATTCCGATAAACGGTTTAGGAGAAACAGCAAAAACAGTACTGCTGACAGGGTCCGGAA
ATCAGGACAGCAGTTCGTTTTCCTTAATCTGGGATTTTCAGAGGCATAATCTGATTTTGTGCTCAACATGAAAGTTGTAGACAATTTTGTCTAGATGTCT
GAAGTTGTATTATTTGCTAGTTTCCGTTAGACGGGTTGTGAGTTACTCATAAAACAGTAATGGAACAGCTATAGGTTATTTAATACAAATCGGTAAAAGG
TTTATATGTTCTAGGTTTCGATTTTAGTAAATATCCCTTGTAACCATCGTTAGTTGAATATAGTGGTTTATGCGTAGTTTTGCTCCACAGGTGTGGAGGG
TTCCAACGTTGGAGGAGTTGAGTCGGAGTATCGAAGGAGTTAAGGCAAGTACAAGACGGACTTATGTGATGGACAAAAGTTGTTTTTAGGGATGAAACTG
GTTCGGATAGTTTCCGTCCGTCCGGACCATTTTTCGGATTCGGATAGTTTCGGTCGGAATTATCCGGAAATTCTCGGATTCGGAAACGAATTCGGATATT
TTTTCTCGGAAACGAAAACGAATACAGTAAGGGCAATATCCGTCGGAATCGGAAAATGGTCGGAAACTATCCGGAATTTTTTTCGGATATCCGCAGACAT
AACTTTTTTGGATATAAAAAACACGTATATATACATAACTTTTTCATACGGAATCAGATGAAGACAAACTTTATATCAACATTGTAGAGCTCGATGAGAT
CTACAACTTTATTATTGACTATTTTATTATTTGAGGTCATTTATGGGTCTAAATATTCATTATAATATACCATATTAATTTTTACAAAATCTCAGATCTT
CAATTCAACGATATCTGATGGAGATGTGTTCCATATCAAAGTTGTAGATCTCAACGGGATCTACCACTTTGTAGTTTATAACATTTGTATTTGAAAGCAT
TTAAAGTATAATACAAACATTACAAGTTTCGAAGATGTGAAGTAAAATAAATAAAATCTCCAATTTATACAATGATAAGTAAGTTATATATCTAGTAAAA
GGTCTTGGGAATAGAAAATGATAATCATATTTGCATATGGATCTTTTAGAGGAACAGCCATGAAAATCAATTTTCACATACGGTTGTGGGACCGTATATA
AAATTGACGATATAAATGTTGGAGATGTTGATGATATAAATTGACGATATCTCTTCTTTGATCAAGAAAACTCAATTTGAGGGGTTTTTTATATACCAGT
AAATATTCGCTACCGTATTCGTTCCGTCTCGTATTCGC