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Detailed information on CNT30102748


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7F1U0|PER22_ORYSJ, E-value = 1e-87

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694715Oryza rufipogonOryza sativa52.1640.1898.25399forward
CNT30672255Oryza rufipogonSetaria viridis23.5342.6587.78180forward
CNT30180126Oryza rufipogonSecale cereale35.2945.4584.44270forward
CNT30221499Oryza rufipogonHordeum vulgare35.4293.1383.39271forward
CNT30386567Oryza rufipogonTriticum turgidum12.6827.2585.5797forward
CNT30554321Oryza rufipogonOryza glaberrima40.5263.7999.68310forward
CNT30659540Oryza rufipogonTriticum dicoccoides41.3188.5281.33316forward
CNT30348947Oryza rufipogonEragrostis tef18.8231.9386.11144forward
CNT30596630Oryza rufipogonOryza meridionalis52.0351.8287.94398forward
CNT30370682Oryza rufipogonOryza glumipatula51.6348.8989.11395forward
CNT30577207Oryza rufipogonOryza barthii72.8163.7393.9557forward
CNT30117253Oryza rufipogonOryza nivara33.23495.28254forward
CNT30604331Oryza rufipogonOryza punctata41.1845.7291.11315forward

Expression of CNT30102748

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MADEKALLNAALLEAKFLTVLSVLLPLKSTWSECRSPLLDSRLL*

>peptide 2 (48 aa)
MGFLICFKHFVLIRENTLSKHFRLVKYYYCDIYGPALFPNLCLLLYPV*

>peptide 3 (46 aa)
MSAWLSPLAANEAVRLATSKDGGGRSLFASAKLAVVESRLPRRTLHD

Sequence

>CNT30102748
TTATCATTCATGCATTCCTTGATAACTTCAAAACCATACTGATCGGTACATAACATGGGCTTCCTGATCTGTTTCAAACACTTTGTGCTGATCAGAGAAA
ACACTCTTAGCAAACATTTCAGACTAGTAAAATACTACTACTGTGACATATATGGCCCAGCCTTATTCCCAAATTTGTGTTTGCTTTTGTATCCAGTTTG
ATTCTTTACTTAATTATTAGTTCACTTTGGAGCAGCTAAGCCTGATCTGTCCCTGGCTCCCGGTGAGTGGTCCGAGGTTGGCCATCTTCACCATGGCCGA
CGAGAAGGCGCTGCTGAACGCCGCCCTGTTGGAGGCGAAGTTTCTGACCGTGTTGTCCGTGCTGTTGCCGTTGAAGAGCACCTGGTCGGAGTGCAGGAGC
CCCTTGTTGGACAGCAGGTTGCTGTAGTAGGCGTTGTCGAAGGAGTAGGGCGTCGTCGTGTCCAGCGCCGCCAGGTTGCCGTCGCCGCTGCCCGTCGGCC
GCGGGCAGCTGGCCTTGAGCGCCGCCGCGAAGGCGGCGTCGATGTTGGTCTCGTTGTAGAGCCTGTCGCGGAAGTTTTGGCACTGCGCCTGCCCGACCGT
GTGCGCGCCGGAGAGCGCCACCATGTCGGCTTGGCTCAGCCCCTTGGCGGCGAACGAGGCGGTGAGGTTGGCGACGTCGAAGGACGGAGGTGGCAGGTCG
CTGTTCGCCAGCGCCAAGCTCGCCGTCGTCGAGTCACGCCTCCCGAGAAGAACCCTCCATGACGG