Detailed information on CNT30102734


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006261, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553284Oryza rufipogonOryza glaberrima11.1224.7588.52122forward
CNT30369198Oryza rufipogonOryza glumipatula23.8879.1594.66262forward

Expression of CNT30102734

Peptides detected in this lncRNA

>peptide 1 (59 aa)
PPRGRGAGRSRSLLVDPPANTTTNHLVHGHLLASHGCCSSAPPHLSSWYCHALYVLMFN*

>peptide 2 (93 aa)
MRRKVLLVYLLNFLYPALPSYHIQLNCSYSLHRVHPKLPGYMPSGTPYFLCARVDDIAICMTVPFAYMPRMASVCTPSLRSNTICLEALHYSR*

>peptide 3 (41 aa)
MLCANEAIWMVHHHEASIHSNRQGHKFIITGLMCKSDQKRE*

>peptide 4 (55 aa)
LPADAVPAAAVVFSWIRRPTPPPTISSTAISSLLMAAARRLLHTSPVGTAMLCMY*

Sequence

>CNT30102734
CCTCCCCGCGGACGCGGTGCCGGCCGCAGCCGTAGTCTTCTCGTGGATCCGCCGGCCAACACCACCACCAACCATCTCGTCCACGGCCATCTCCTCGCTT
CTCATGGCTGCTGCTCGTCGGCTCCTCCACACCTCTCCAGTTGGTACTGCCATGCTCTGTATGTACTGATGTTTAATTAGGTTTCTTTTCTTTTCCTCAT
ATTGTTGATCTGCATACTTATTCCTTTCTGCAGTAGCTGTTTTACTGCTCAGTTTGGCTTTGCTTTGCTGTCTATGCAGGTGCGTAGGATACACATTGGT
CTGGGATATCAATAATGTTCCTCTTCCATTGTTACAGGTTTCATGGCGTTGCAAATGCTTTTGTAGCTTTCATGTGATGACGAGGGCCTTCATTTGTGCG
AATATACACAAGTTGCTGGCATTTCTTCATTTTGCATAGTACAAACTCTGATGTTATGTGCAAATGAGGCCATATGGATGGTTCATCACCATGAAGCTTC
AATTCATAGTAACCGGCAAGGTCACAAATTTATAATAACAGGATTGATGTGCAAATCTGATCAGAAAAGGGAGTAAACTACAATCCACTGCTTCTTCCAC
TCCATGCAGTACACCTGTGAAATGTGCCTGCTTTGACTGTTTTGTATACAACAATACAAGTACCCACCTCTTTCCTCTTGACAAGTGCCCACCTCTCCAT
CAACCCCTTTCCTTCTCTAGGTGAGTATTAAAGGTGCACATGAGCTAGCTATATAATTTTTAGTCTTTCTTCAATTGACATGCGTAGAAAAGTTCTATTA
GTTTATCTGTTAAATTTTCTATATCCAGCTTTACCTTCATATCACATCCAGCTAAATTGTTCATATTCCCTTCATAGGGTGCATCCTAAACTGCCAGGAT
ATATGCCAAGTGGTACGCCTTATTTTTTGTGTGCACGTGTGGATGACATTGCTATATGCATGACTGTCCCTTTTGCGTATATGCCCAGGATGGCATCAGT
ATGCACACCTAGCCTTAGAAGCAACACCATTTGTTTAGAAGCTCTGCATTATAGCCGCTAATGTAAATAGCTGTTGTCATATATATGGTGTTTGCTT