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Detailed information on CNT30102692


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695064Oryza rufipogonOryza sativa55.243.999.68313forward
CNT30116314Oryza rufipogonOryza nivara17.8148.7995.05101reverse complement

Expression of CNT30102692

Peptides detected in this lncRNA

>peptide 1 (47 aa)
LSLFSLSHAGHHLAMPNLLYRSNTNQILAPPYLPPSDEPIFLVSPLL*

>peptide 2 (41 aa)
SLSSLSPMPATILPCPISFTGATLTKSSRHHTCLPPTNPFF*

>peptide 3 (37 aa)
MVFQELDNQVAYLGFICVGARVYLELLPKLGVQSHKLV

Sequence

>CNT30102692
CTCTCTCTCTTCTCTCTCTCCCATGCCGGCCACCATCTTGCCATGCCCAATCTCCTTTACCGGAGCAACACTAACCAAATCCTCGCGCCACCATACTTGC
CTCCCTCCGACGAACCCATTTTTCTAGTTTCCCCTCTCCTTTAGCCATCCTATAAGCCACCATCACCACTTCTTTTACTCGCCAGAGTTGAGCTCTTGTC
GTCGCCGTTCCGGCCATCTCCCTTTCTCTCTCCACCAGCCACCGACCTCCCCGGGTGCGTCGTGCTCGGGAACACGCGTGGACGCCGACGTCACCGCCCT
CCAGCCACCGGAGCGCCGCCGCCCCGATTGCCTTCTCCTCTCTCTTCTCTCGGCTCTCTCTGGAACAGAGAAGAAGAAAGGAACGGGAGGAAGAAGGAGA
AGAAAAAGAAAAAGACTGACAGTAGAGTCTATTGTCTTTTGGATGGCAACCTATGGTATTTCAAGAATTGGATAATCAGGTTGCCTATCTTGGATTTATT
TGCGTTGGAGCAAGAGTCTATTTGGAGTTGTTGCCGAAGCTGGGAGTTCAATCACATAAGTTAGTTC