Detailed information on CNT30102685


BLAST search results

BLAST vs Swiss-Prot:
sp|P36886|PSAK_HORVU, E-value = 2e-57

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694964Oryza rufipogonOryza sativa44.335.96100233forward
CNT30671922Oryza rufipogonSetaria viridis34.7950.6992.9183forward
CNT30290233Oryza rufipogonTriticum aestivum31.7540.6391.02167forward
CNT30611008Oryza rufipogonArabis alpina38.5976.681.77203forward
CNT30339854Oryza rufipogonEragrostis tef24.935.693.13131reverse complement
CNT30325346Oryza rufipogonAsparagus officinalis32.8936.4286.13173forward
CNT30581185Oryza rufipogonEchinochloa crusgalli36.6944.3792.23193forward
CNT30118070Oryza rufipogonOryza nivara43.1640.6195.59227forward

Expression of CNT30102685

Peptides detected in this lncRNA

>peptide 1 (83 aa)
MIWSRTPMFLRPRTTPTPMMWPTAPQASVSASVNPAGSPVCRPESRASSFSPAVDFLFADGASPNLPANSISVVELTMDLGEE*

>peptide 2 (30 aa)
MWRRRAGKPWLEPTFSSSLQLSFEEKNNVKC

>peptide 3 (32 aa)
MIITSSITQALMHRLHIGVLIRVTSLMNLISR*

Sequence

>CNT30102685
ATTGGTTGACAGAAACAAAATTAAGCTAGATAAGCACTGATTCCACGCACAATTTACATGATCATTACATCGTCCATCACACAGGCACTCATGCATCGAT
TACACATAGGAGTATTGATTCGTGTGACTAGCTTAATGAATTTGATTAGCCGATGATCTGGTCCAGGACGCCGATGTTCTTGAGGCCGAGGACGACGCCG
ACGCCCATGATGTGGCCGACGGCGCCGCAGGCCAGCGTGTCGGCGAGCGTGAACCCGGCGGGGTCGCCGGTCTGCAGGCCGGAGTCGCGCGCCTCCAGCT
TCAGCCCCGCCGTCGACTTCCTGTTCGCCGACGGCGCCAGCCCGAACCTCCCCGCGAACAGCATCAGCGTCGTCGAACTGACCATGGACCTAGGAGAGGA
GTAGGTCCGGAGGCCATGGAACTGCGGCACGGATGTGGCGGCGGAGAGCTGGGAAGCCATGGCTGGAGCCTACCTTCTCCTCCTCCTTGCAGCTGAGTTT
CGAGGAAAAAAATAATGTCAAGTGCC