Detailed information on CNT30102681


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694654Oryza rufipogonOryza sativa99.4797.9100560forward
CNT30554473Oryza rufipogonOryza glaberrima95.3885.5199.63537forward
CNT30369472Oryza rufipogonOryza glumipatula95.3894.0599.63537forward
CNT30577129Oryza rufipogonOryza barthii95.296.499.63536forward
CNT30117222Oryza rufipogonOryza nivara95.3896.0699.44537forward

Expression of CNT30102681

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MIMSPDNGEPFQNFLVELSSLMKFKEIYRAERSAFRPNWE*

>peptide 2 (30 aa)
MCNACIIFFCLLIYSTILLPLSYKKTTKIPN

>peptide 3 (40 aa)
STLSMNAADSSLLAAPPTPPSRGQYRLRLLIAHLIASVEN*

Sequence

>CNT30102681
CCTCAACCTTATCCATGAACGCGGCCGATAGCTCGCTGCTCGCTGCCCCTCCCACGCCTCCCTCGCGCGGACAGTATAGGCTAAGATTATTGATTGCCCA
TTTGATTGCATCTGTGGAGAACTGAAGATATCCAGCTGAATTTTCTTGTGGACATAACAATCAAAAGCATGAGAGGAATCGAACAAAGATTGAATTTGTG
TTTTTGAGAAGCCTACTTAGGTCAGCCACATCACTCCGACGGATCACATTGGCTTTCCATGGTATGATTATGAGTCCTGACAATGGGGAGCCATTCCAGA
ACTTCCTGGTTGAACTATCCAGCCTGATGAAATTCAAGGAAATTTACCGCGCTGAGAGATCCGCATTCAGACCAAACTGGGAGTAAGCGTGATCATTCAG
AAACAGCGTGCTACAGATCAACACCAAAATTCCTAAATTGCATGTCCTTGCCAAAATTGTAATAGACAATGTGTAATGCTTGTATTATATTTTTCTGCCT
TCTAATATATTCGACAATACTCTTGCCGCTTTCATATAAAAAAACCACCAAAATTCCGAATAA