CANTATAdb - search

Detailed information on CNT30102673

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30694850	Oryza rufipogon	Oryza sativa	49.77	72.17	91.54	319	forward

Expression of CNT30102673

Peptides detected in this lncRNA

>peptide 1 (81 aa)
MVPPLEVRGEEGVRGGVVSGVDGLVQPDHQPLVPLQVFFFFLSLLLVQQQLLRLLILSRRQPGDERDDESCTTRNQVKEGDC

>peptide 2 (62 aa)
MWWLAGGPWYHHSRSGARRACAAVWSRALMASYSRITNHWFRCKSSSSSCRCCWCSSSCCGC*

>peptide 3 (42 aa)
RMQSCFIIVQPYKRHYLNSSSCGSGESVTADEDEDADAVKVK*

Sequence

>CNT30102673
TGAGAATGCAAAGCTGCTTTATTATTGTTCAACCATACAAGAGACATTATTTGAACAGTAGTAGCTGCGGAAGCGGCGAGAGCGTCACCGCTGACGAAGA
CGAAGACGCAGACGCAGTAAAAGTGAAGTAAAGGAGGCCACATTTCTTATTATATACTAATTGCAAATAATACTGTAATTACGCGTACTAGGTGTGATCG
ACGTATTGGAGCAGCAGAATGGAGGGGATTGGTTGAAGCTGATTGATGGTAATCACAATAAGATGATGAATTAGAGGGCGAGGAGGAGGGCCGGGAGGGC
GTGGACGGAGAGCGGGCGGAAGCGGAAGGAGGAAGAGGAGGGCGAGGCGCAGCCGGTGAGGAGGCGCATCATGTGGTGGCTGGCGGGTGGGCCATGGTAC
CACCACTCGAGGTCCGGGGCGAGGAGGGCGTGCGCGGCGGTGTGGTCTCGGGCGTTGATGGCCTCGTACAGCCGGATCACCAACCACTGGTTCCGCTGCA
AGTCTTCTTCTTCTTCTTGTCGTTGTTGTTGGTGCAGCAGCAGCTGCTGCGGCTGCTGATCCTGTCGAGACGCCAGCCCGGGGATGAACGAGACGACGAG
AGTTGCACAACAAGAAACCAAGTGAAGGAGGGAGATTGTGG