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Detailed information on CNT30102660


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673704Oryza rufipogonSetaria viridis80.2151.1195.33300forward
CNT30524653Oryza rufipogonSetaria italica22.997.1888.3786forward
CNT30525798Oryza rufipogonPhaseolus vulgaris65.7831.8792.68246reverse complement
CNT30177674Oryza rufipogonSecale cereale89.316.4595.21334reverse complement
CNT30221081Oryza rufipogonHordeum vulgare89.316.4995.81334forward
CNT30394116Oryza rufipogonTriticum turgidum89.380.6895.21334forward
CNT30538116Oryza rufipogonBrassica napus42.2513.0495.57158forward
CNT30555411Oryza rufipogonOryza glaberrima67.9163.0396.85254reverse complement
CNT3017925Oryza rufipogonZea mays89.329.2796.71334forward
CNT3067405Oryza rufipogonLeersia perrieri85.2977.0590.91319forward
CNT30647597Oryza rufipogonRosa chinensis53.4839.2292200forward
CNT30203328Oryza rufipogonHelianthus annuus89.340.5893.11334forward
CNT30371139Oryza rufipogonOryza glumipatula83.1662.8395.82311reverse complement
CNT30154718Oryza rufipogonPrunus persica22.9912.4188.3786forward
CNT30409295Oryza rufipogonPapaver somniferum89.359.1294.01334forward
CNT30576588Oryza rufipogonOryza barthii24.8721.1889.2593reverse complement
CNT30604605Oryza rufipogonOryza punctata47.5977.0693.26178reverse complement

Expression of CNT30102660

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MISSWSERMISHTGTDTQPRLLRETAVGNFPQWAKA*

Sequence

>CNT30102660
GGGAAACATGCAAGTCGAACGGGAAGTGGTGTTTCCAGTGGCGAACGGGTGAGTAACGCGTAAGAACCTACCCTTGGGAGCGGAAAAACAACTGGAAACA
GTTGCTAATATCCCGTAGGCTGAGGAGCAAAAGGAGAAATCCGCCCAAGGAGGGGCTCGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGC
GATGATTAGTAGCTGGTCCGAGAGGATGATCAGCCACACTGGGACTGATACACAGCCCAGACTCCTACGGGAGACAGCAGTGGGGAATTTTCCGCAATGG
GCGAAAGCCTGACAGAGTAATGCCGCGTGGAGGTGGAAGCCTGGAAGGCCCACGGGTCGTCAACTTCTTACCCG