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Detailed information on CNT30102658


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694968Oryza rufipogonOryza sativa10095.9299.87753forward
CNT30109903Oryza rufipogonOryza longistaminata89.9190.6397.64677forward

Expression of CNT30102658

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MVMELLLFGEDRMVAKIGQQCMQLPSSFLKFMDKSDFGTWELSLWLYSMF*

>peptide 2 (45 aa)
MPPLVRSDGAQHRCGLLRSVSTIRPLRLPHQEPQGPRHLLLPCLG*

>peptide 3 (72 aa)
PQTLGILVHHPEQHTAASSRLERRPSRRCSSRRPPARHTASARAGASRCFSLLLSPQMTPPPLTVDAASRQI*

Sequence

>CNT30102658
CCCCCAAACCCTAGGGATATTGGTCCACCACCCTGAGCAACACACCGCTGCCTCTTCTCGACTGGAGCGGCGCCCAAGCCGCCGCTGCTCGTCCCGTCGC
CCGCCGGCGCGGCACACCGCATCTGCTCGCGCCGGCGCCTCACGTTGCTTCAGCCTCCTCCTCTCGCCACAAATGACGCCGCCTCCTCTCACCGTAGATG
CCGCCTCTCGTCAGATCTGACGGAGCTCAACATCGGTGCGGCCTTCTCCGTTCGGTCTCCACCATCCGGCCACTGCGTCTTCCCCATCAAGAACCTCAAG
GACCTCGTCATCTTCTACTACCTTGTCTAGGTTGAGGAGCTGGCTGGCTGACAGAAACATAGTACCATGGTCATGGAGCTACTATTATTTGGTGAAGATC
GAATGGTGGCAAAGATAGGACAACAATGCATGCAGTTACCATCTTCATTTCTTAAATTTATGGACAAATCAGATTTTGGGACCTGGGAACTTAGTTTGTG
GTTGTACTCAATGTTCTAGGTGTTGATGTCCTTTGCTTCCGATTTTATTTTACCTTACTGTGGTGATGTATAAGAAAAACTTCTCAGTGGGCTCTTTGCT
AAACACTAAAATTTAAATGCTTGTAATATTGTTTGGAGGGCACAGATTGACTTACCACATGTGAATTTGTCAACTGATACAATGCATAGCAGTGTTAATT
ATCGTTTTAAAAACTTGGCAGTATTTTTATTTTCTTTATTTAATGAACTGTTT