Detailed information on CNT30102628


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6Z4N6|40G2_ORYSJ, E-value = 6e-161

BLAST vs NONCODE:
NONZMAT000139, E-value = 8e-63

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694973Oryza rufipogonOryza sativa53.2780.3899.85676forward
CNT30672063Oryza rufipogonSetaria viridis18.244.7790.91231forward
CNT30522081Oryza rufipogonSetaria italica17.4938.3492.34222forward
CNT30180108Oryza rufipogonSecale cereale16.0893.1592.65204forward
CNT30289434Oryza rufipogonTriticum aestivum18.9941.6292.95241forward
CNT30221546Oryza rufipogonHordeum vulgare16.1589.9194.15205forward
CNT30554471Oryza rufipogonOryza glaberrima38.2288.0298.56485forward
CNT30436341Oryza rufipogonAegilops tauschii14.560.5394.02184forward
CNT30251924Oryza rufipogonAvena sativa18.643.3893.22236forward
CNT30450022Oryza rufipogonSaccharum spontaneum18.4422.6393.59234forward
CNT30596591Oryza rufipogonOryza meridionalis18.5249.8997.87235forward
CNT30370660Oryza rufipogonOryza glumipatula40.2789.0299.22511forward
CNT30148227Oryza rufipogonBrachypodium distachyon13.4867.8689.47171forward
CNT30577143Oryza rufipogonOryza barthii39.2498.2298.8498forward
CNT30496422Oryza rufipogonDigitaria exilis17.9736.9588.6228forward
CNT30117165Oryza rufipogonOryza nivara35.1599.55100446forward
CNT30604388Oryza rufipogonOryza punctata12.2946.9998.08156forward
CNT30556620Oryza rufipogonPanicum hallii17.4222.4694.12221forward
CNT30551356Oryza rufipogonOryza brachyantha12.3745.3897.45157forward

Expression of CNT30102628

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MLFTMRMQRKPLPTSLLSVHSTDSSWYSGL*

Sequence

>CNT30102628
TCAAGCCCCAACTGTATGTGTTTATATATGTGTCGCCCAGCGAGAGGAGCTCTTATTGCCAGGTAATTAATTAACTTGTACAAGATACAAGCACACCACA
CGATAATCATACGGTACGGACGAGCATAAGTTACTCTTAGCTACGTATATAGGTGGGTAGCTAGCAGAGAATAATTATTCTGCACCAGATTCGTTGATAT
CAACTTGAGCCTTGATAGAGAGCTGGATCGATGTATCGATCAGCTCAGTAGTAGGGCTGGATCTTCCAGCGCTGGTTGTCGCCCTCGCACCACTTCCAGA
GCACGATGTCGGTGCCGTCGCGGACGCCGCCGTGGTACTTGTCGCCGTGGAAGGCGTCGAAGTTGAGGTAGATGTTGTTCACCATGCGGATGCAGCGGAA
GCCCTTGCCCACATCCTTGCTCTCCGTCCACAGCACAGACTCGTCCTGGTACTCTGGGTTGTAGGGAACCAGCTTCACCTGCATGCGCAGAGAAAATCGT
TCGTTGTGATTCAGAGATTCGTTGCATATGTAAGAAAATATTTATTTTGTAAGAAAAGATTTGCTCACCGGGTGGCCCTGTCCGGTGGAGTGCTTGATGG
CTTCGCCGGTGACCTTGTTGACCAGCGCGAACGCCGGGTAGCCTTCCTCGTCCCTGATCTTGTTGCTGTGCCTCATGTCCTTGATCCAGTGCTACAAACC
ACAACCACAAATCTCTCAAGGTTTTTCTCTATCTGAATAGTAGTATATAATTAAGAGGAGAATACGTACCTGGTAGTCGTCCCTGGGGTTCTTGGGGGCG
AGGCAGGCGGTGCCGTTGCGGACGGTGAGGCAGTAGTCCTCGCCTGCGGCGGAGAAGACGCGGACGGTGTGGACGGGGACGCCGCCGATGGTGCAGGCGG
TGGCGGCGCCGGGGGAGGAGGAGTGAGCCTCGGGGCCCCAGGGGAGGATCTTCCAGCTCTGGTTGTCGCCCTTGCACCACTCCCAGAGCACGACGGTGGT
GCCGTCGCGGACGCCGCCGTGGTCCTTGTCGCCGTGGAAGGCGTCCAAGTTGAGGCGGGTGTTGTTGACCATGCGGATGCAGCGGAAGCCCTTGCCGACG
CAGTAGTTCTCGTTGGCGCGGCAGAAGATCTTGAAGATCTGGTTCGGGTCCGACGGCGCCGCCGGTGCCTGGTTGTGGTGGTGCCCGAACCCAAACATCT
TCGACCCTTAATTCGATCGGTGCAACTCGCGACTCGCGAGAGAAATGTTTTTGTGCTGCGACTGCGAGC