Detailed information on CNT30102592


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30596668Oryza rufipogonOryza meridionalis42.8386.8294.16257forward

Expression of CNT30102592

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MVAVAASTETTARSNTENTTLLEAIFLLQKILTINLYMRGIAIYGWFLYIAIKTKVISRTDTIFFAVHNCD*

>peptide 2 (52 aa)
AYALALHHRPAARQRVHRVAHSWLTMLAGAVHHLVFVVVRHGRRRGEHGDNG*

>peptide 3 (75 aa)
GLRTGASPPPGSAAASTSGSPFLADNARRGCTPPGLCGGPPWSPSRRARRQWLGATPRTLPCWKPWLFVCRKSLV*

>peptide 4 (63 aa)
MRGIAGTSGSPFLADRAGPGCRPPGLGGGTPPWSPSPRARRRRREATLRTLPCWKPYFCCRKS*

>peptide 5 (46 aa)
MVAVAASTETMARSNAENTTLLEAMAFCLQKIFSLNLYERDSGYIG*

Sequence

>CNT30102592
TGGCCTACGCACTGGCGCTTCACCACCGCCCGGCAGCGCGGCAGCGAGTACATCGGGTAGCCCATTCCTGGCTGACAATGCTCGCCGGGGCTGTACACCA
CCTGGTCTTTGTGGTGGTCCGCCATGGTCGCCGTCGCGGCGAGCACGGAGACAATGGCTAGGAGCAACGCCGAGAACACTACCTTGTTGGAAGCCATGGC
TTTTTGTTTGCAGAAAATCTTTAGTCTGAATTTGTATGAGAGGGATAGCGGGTACATCGGGTAGCCCATTCCTGGCTGACAGAGCGGGCCCGGGGTGTAG
ACCACCTGGTCTTGGTGGTGGTACTCCGCCATGGTCGCCGTCGCCGCGAGCACGGAGACGACGGCGAGAAGCAACACTGAGAACACTACCTTGTTGGAAG
CCATATTTTTGTTGCAGAAAATCTTAACTATCAATTTGTATATGAGAGGGATAGCTATCTATGGGTGGTTTCTATATATAGCTATAAAGACTAAAGTGAT
CTCAAGAACGGACACAATTTTTTTTGCTGTTCATAATTGTGATTAGCTTGTTTGCATAGAACATTTATTGTGACTCACACCTAATCGATTTGGACATGAT