Detailed information on CNT30102585


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6Z4N6|40G2_ORYSJ, E-value = 8e-63

BLAST vs NONCODE:
NONZMAT000139, E-value = 1e-80

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692288Oryza rufipogonOryza sativa62.2244.3391.32219forward
CNT30520655Oryza rufipogonSetaria italica62.2288.3191.78219forward
CNT30392320Oryza rufipogonTriticum turgidum54.559688.54192forward
CNT30439818Oryza rufipogonAegilops tauschii58.8169.2388.89207forward
CNT30658643Oryza rufipogonTriticum dicoccoides62.7849.8992.76221forward
CNT30680880Oryza rufipogonTriticum urartu62.7842.7592.76221forward
CNT30721558Oryza rufipogonTriticum spelta62.598.2188.64220forward
CNT30341741Oryza rufipogonEragrostis tef58.2433.8395.61205forward
CNT30596661Oryza rufipogonOryza meridionalis101.99100.2892.48359forward
CNT30104991Oryza rufipogonOryza longistaminata62.592.8398.64220forward
CNT30575680Oryza rufipogonOryza barthii62.2287.9591.32219forward
CNT30593977Oryza rufipogonEragrostis curvula62.2298.6592.24219forward

Expression of CNT30102585

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MRMQRKPLPTSLLSVHSTDASSYSGLNGTSF

>peptide 2 (77 aa)
MVQAVDLPALVVALAPLPEHDGGAVADAAVVLVAVEGVQVEAGVVDHADAAEALADVLALRPQHRRVLVLRVERHKLH

>peptide 3 (79 aa)
LVVVPGVLGGEAGGAVADGEAVVLACGGEDADGVDGDAADGAGGGSSSSGCRPCTTPRARRWCRRGRRRGPCRRGRRPS*

Sequence

>CNT30102585
CTGGTAGTCGTCCCTGGGGTTCTTGGGGGCGAGGCAGGCGGTGCCGTTGCGGACGGTGAGGCAGTAGTCCTCGCCTGCGGCGGAGAAGACGCGGACGGTG
TGGACGGGGACGCCGCCGATGGTGCAGGCGGTGGATCTTCCAGCTCTGGTTGTCGCCCTTGCACCACTCCCAGAGCACGACGGTGGTGCCGTCGCGGACG
CCGCCGTGGTCCTTGTCGCCGTGGAAGGCGTCCAAGTTGAGGCGGGTGTTGTTGACCATGCGGATGCAGCGGAAGCCCTTGCCGACGTCCTTGCTCTCCG
TCCACAGCACCGACGCGTCCTCGTACTCCGGGTTGAACGGCACAAGCTTCAC