Detailed information on CNT30102580


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000979, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694855Oryza rufipogonOryza sativa38.46100100510forward
CNT30577054Oryza rufipogonOryza barthii82.510099.731094forward

Expression of CNT30102580

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MESSAFSLLVGSAENAPSAVGIAVNLAGRRGLLLLLPLFSPPSKRQVGPI*

>peptide 2 (36 aa)
CSFFNRQEHRDRRPETESGCSCSTRVRSRGNADILF*

>peptide 3 (96 aa)
VVSLTDKNTETGGQRPRAVVRARRVSAVVATPTSSFSPPRERAPSPSVALSAAGHEEDDARCRRRVIAIPNSSPFHTLLSMPNISSVEPILFHPLQ*

>peptide 4 (94 aa)
MQLPSDLTNHTYTFSEHPIDRSEPVAVKPTPSFVAEPSSPLPPLSRRPDLTVLGSSFPQSRRRTNHFYALLRRQNHHLRVRNGVICIFSFGWVG*

>peptide 5 (57 aa)
MKKTTLAVADESSPFLTHLRSILFSPCRTFLLLSPSCFIHCSNGNADLAIVVPERAP*

Sequence

>CNT30102580
GTGTAGTTTCTTTAACCGACAAGAACACAGAGACAGGCGGCCAGAGACCGAGAGCGGTTGTTCGTGCTCGACGCGTGTCCGCAGTCGTGGCAACGCCGAC
ATCCTCTTTTAGCCCACCGAGAGAGAGAGCCCCCAGCCCCTCCGTCGCACTCTCCGCCGCCGGCCATGAAGAAGACGACGCTCGCTGTCGCCGACGAGTC
ATCGCCATTCCTAACTCATCTCCGTTCCATACTCTTCTCTCCATGCCGAACATTTCTTCTGTTGAGCCCATCTTGTTTCATCCACTGCAGTAACGGGAAC
GCGGACCTCGCCATCGTTGTCCCGGAGCGAGCACCGTAGGTCGCCGGCACTAGCATCGTCGTCGTGCCCAACGGAGGATACCACCCCGAGCTGAGTCCTC
TCACCATCATCCTCCTATCGATCTCCTCTTCAAAAGCCCTCAAGAATCCAAGCCAATGGCGCAGCTAACGGGGAGATCGGCATCATCTTCTTCAACTCCG
GCCAACCGCCGCCGCCGTCGAATCCTCTTCCTCCGGTGAGCCGCAGATCAATTCCTTGCGCATGCAACTCCCTAGCGATCTCACTAACCACACATACACC
TTTTCTGAGCATCCCATCGACCGGAGCGAGCCCGTCGCCGTGAAGCCGACGCCATCCTTCGTCGCCGAGCCATCTTCTCCACTGCCGCCGTTGTCCAGAC
GACCAGACCTCACCGTGCTGGGTTCAAGCTTTCCTCAAAGCCGTCGCCGCACAAATCACTTTTACGCGCTGCTCCGGCGACAAAACCACCATCTACGGGT
TCGCAATGGAGTCATCTGCATTTTCTCTTTTGGTTGGGTCGGCTGAGAATGCACCGTCCGCCGTCGGCATCGCCGTGAACCTCGCCGGCCGGCGAGGTCT
GCTCCTGCTGCTGCCGCTCTTTTCTCCCCCGAGCAAACGACAGGTGGGGCCCATTTAATTAGGCACTAAGGACTGTGATTAGAAATAGTTTAAAACATGT
AAGGTTGAAATTGTAAAATCGTATAGCATGACATGTGGACCCAAGAACTTGCATGCAACTAAATTAAAACTTGATCACTCTTAATGAATTTTGATTTAGC
ACGTGCTAGGGACCACACGACCTATTCCTAGAATCCTCAAGGACCTTTCTGCGTATATACCACTGTATTTAAATTCTGAAAAAAATGTAAAGAAAACAAC
TAAAGTATTATCTACTCAACAGGAAAAACATGCAAACTTGTATATTAAAAAGATACACTTAAAGTACAAGAACCATCTTTAAAATTTTGTATAAGGCTCT
GTTTAGATCCAATCATAAAACTTTAC