Detailed information on CNT30102562


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006057, E-value = 2e-171

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695043Oryza rufipogonOryza sativa78.3566.2100333forward
CNT30554091Oryza rufipogonOryza glaberrima15.2922.1893.8565reverse complement
CNT30105929Oryza rufipogonOryza longistaminata14.1226.29560reverse complement

Expression of CNT30102562

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MHGTTPVVIFVQPAGTNFLLNIGLLLAFCSLISFYLLLK*

>peptide 2 (47 aa)
PATQLSAMLGLCSAHPNACPPRTHEFGVNLGTSTKKSGEKGLEVAMM*

>peptide 3 (58 aa)
TSNSALRDAWALLCPPKRVPPTHTRIRREFRHKHQEIGGKRFGSSNDVNTTQQTAAGD*

Sequence

>CNT30102562
GACCAGCAACTCAGCTCTCCGCGATGCTTGGGCTCTGCTCTGCCCACCCAAACGCGTGCCCCCCACGCACACACGAATTCGGCGTGAATTTAGGCACAAG
CACCAAGAAATCGGGGGAAAAAGGTTTGGAAGTAGCAATGATGTGAACACAACCCAACAGACAGCTGCTGGTGATTGATTTGTCTCGAGCTGAACTGGTG
CTAATCATGCACGGTACTACTCCAGTAGTGATTTTTGTACAGCCAGCTGGTACTAATTTCCTCCTAAACATAGGGTTGTTGTTAGCATTTTGTTCTCTCA
TCAGCTTCTACCTGCTCTTGAAATAAAAGTAGGACTGCAATCTGTTGTACCTTACTATGGCTGTGTTTAGATTTAAAGTTTGGATCCAAACTTCAGTCCT
TTTCCATCACATCAACCTGTCATAC