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Detailed information on CNT30102507


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694963Oryza rufipogonOryza sativa11.3430.1886.7583forward
CNT30596580Oryza rufipogonOryza meridionalis61.7549.5188.72452forward
CNT30370781Oryza rufipogonOryza glumipatula61.0731.6897.99447forward
CNT30117205Oryza rufipogonOryza nivara10062.3599.73732forward

Expression of CNT30102507

Peptides detected in this lncRNA

>peptide 1 (77 aa)
MVFALPLHLRNDRQLRLQWPALLPAMVKMESDHSATVASGVHPALVVVHSTLVVVVDQVLAVYQDWVLAIGQALVAH*

>peptide 2 (44 aa)
MKPNVESERINLNGPWSSWFLPSRYTSGMTGSSGFSGRRFFRLW*

>peptide 3 (29 aa)
VTHIYTDDRHGMHAVDTIKKYTNETKCRI*

Sequence

>CNT30102507
AAGTAACACACATCTACACGGATGACAGACATGGCATGCACGCCGTTGATACAATAAAGAAATACACAAATGAAACCAAATGTAGAATCTGAACGTATCA
ATCTGAATGGACCTTGGTCATCATGGTTTTTGCCCTCCCGTTACACCTCAGGAATGACCGGCAGCTCCGGCTTCAGTGGCCGGCGCTTCTTCCGGCTATG
GTGAAAATGGAATCTGACCATTCGGCAACGGTGGCATCTGGGGTGCATCCGGCTTTGGTGGTTGTTCATAGTACTCTGGTTGTGGTGGTTGATCAGGTTT
TGGCGGTATATCAGGATTGGGTCTTGGCGATTGGTCAGGCTTTGGTGGCCCATTAGAAATAGGCTGTGGCGGCTGGTCAGGTTTCGGTGGCCCATTAGGA
TTGGGCTGTGGAGGTTGGTCAGGTTTCGGTGGCCCATCAGGACAAGGTTGGGGTGGTTGGTCTGGCTTTGGTGGCATATCGGGATTGGGCTGCGGTGGCT
GGTCAGGCTTTATCGGCCCATTCGGTATAGGTTGTGGTGGTTGGTTAGGGATTGATGGCCCATTTGGATTGGGTTGTGTTGATTGGTCCGGCACCGAAGG
CGCATAAGGATTGGTTGACCCATCAGGTTTAGGCATTGACAGCATATCAGGCTTCGGTGGCCCATTAGGAATGGGCTGTGGTGGTTGGTCAGGCTTTGGC
GGCACATTAGGATTAGGCAGTGGTGGCCCATC