Detailed information on CNT30102489


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554461Oryza rufipogonOryza glaberrima91.5339.4195.22335forward
CNT30107016Oryza rufipogonOryza longistaminata36.3437.2596.99133forward
CNT30577034Oryza rufipogonOryza barthii91.5374.4495.22335forward

Expression of CNT30102489

Peptides detected in this lncRNA

>peptide 1 (44 aa)
LVRCGVSGGVAGAGRAAAREMAAPAASGSAEEARCGELQPASLP*

>peptide 2 (60 aa)
ASCGAGLAVASPERGERRRAKWPLRRRVDQQRKLGVESSNPHPFLNTRLNEQAHLLQGMR*

Sequence

>CNT30102489
GCCTCGTGCGGTGCGGGGTTAGCGGTGGCGTCGCCGGAGCGGGGCGAGCGGCGGCGCGCGAAATGGCCGCTCCGGCGGCGAGTGGATCAGCAGAGGAAGC
TCGGTGTGGAGAGCTCCAACCCGCATCCCTTCCTTAATACCAGGCTGAATGAGCAGGCTCACCTTTTGCAAGGAATGAGATAGTTCTGTCAAGTCTGAGC
TGCTGAGCTTGGATTGAGCATGCAAGCATAGATTTTGCAGAATACTTGCGGCCACATATTTGTATCTGTCATCTCGGATCATGGCAGTGAGCTCTCTAAT
GAATGAATATCCTGGTTCCTTCAACATTGCTGAGCAATTATTGACACTTTCCATTGCCAGCATGGC