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Detailed information on CNT30102488


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694712Oryza rufipogonOryza sativa42100100260forward

Expression of CNT30102488

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MRIILFYNSFPVLKKEMIGRFPLRHLVEKKETQKLDSLIHTG*

>peptide 2 (40 aa)
MWIGGTIATRSKRNRRWGASTTIKQMWPIISKIRRRWHSL*

>peptide 3 (48 aa)
LPSDCPLVQVDHKKKKGHMKQEVLLVDHIHTASQDVDRGHHSYQIQEE*

Sequence

>CNT30102488
CCTCCCATCGGACTGCCCATTGGTCCAGGTTGACCATAAGAAGAAAAAAGGCCATATGAAGCAGGAGGTCCTACTGGTGGACCATATCCATACCGCAAGC
CAAGATGTGGATAGGGGGCACCATAGCTACCAGATCCAAGAGGAATAGGAGGTGGGGTGCCAGCACTACCATAAAACAGATGTGGCCGATCATATCCAAG
ATCAGGAGGAGGTGGCACTCTCTGTAAAGCATGCAAGATTTAGTACAGAAATATTTCTCCAGGGTTGTGGACAGTTAAATTCATTTCTGTCATGTCACTT
TCATGTACATCAGATTTACATACAAGAGAGTATCACAAGAAAGGCCCATCATTACCTAGCACCAGAATGTGTTAACAGGTGCTTATAAAATATGCGTATT
ATTCTATTCTATAACAGTTTCCCAGTACTGAAAAAGGAAATGATTGGTAGATTTCCACTACGACATCTAGTTGAGAAAAAGGAGACCCAAAAGCTAGATT
CACTGATACATACAGGTTAGAATAGCAACGGAACTATATGTGTAAAGATTAGATCCTACAGGAACATGTCTGTCGACGATGCAAAAGAAGGGAAATAACC
AATCACCACTTTCCGTTTA