Detailed information on CNT30102486


BLAST search results

BLAST vs Swiss-Prot:
sp|Q96499|RL44_GOSHI, E-value = 1e-38

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694718Oryza rufipogonOryza sativa10062.98100262forward
CNT30671781Oryza rufipogonSetaria viridis52.2959.5788.32137forward
CNT30401984Oryza rufipogonBeta vulgaris60.6977.5683.02159forward
CNT30298301Oryza rufipogonTriticum aestivum30.5319.2391.2580reverse complement
CNT3087688Oryza rufipogonVigna radiata56.4968.5283.11148forward
CNT30668197Oryza rufipogonTriticum dicoccoides47.7157.691.2125forward
CNT30311937Oryza rufipogonCamelina sativa62.2168.7887.12163forward
CNT3078180Oryza rufipogonBrassica juncea23.2826.0786.8961reverse complement
CNT30452338Oryza rufipogonSaccharum spontaneum66.7948.6195.43175forward
CNT30175989Oryza rufipogonVigna angularis61.0746.1183.12160forward

Expression of CNT30102486

Peptides detected in this lncRNA

>peptide 1 (36 aa)
PSCGKQAWSDHHILTAYGHNGAFPGQTGCPYPSCTE*

Sequence

>CNT30102486
CCTTCTTGTGGAAAACAGGCTTGGTCTGACCACCATATCCTGACTGCTTACGGTCATAACGGCGCTTTCCCTGGGCAGACAGGCTGTCCTTACCCTTCTT
GTACTGAGTGACCTTGTGAAGGGTGTGCTTCCTGCACTCCTTGTTCTTGCAGTAGGTCTTCTTGGTCTTGGGAACCGTACCATTTTCACGGCCGCGGGGA
GGGGGCGGCTAGGGTTTCGGAGGCAAGTGGCGGCGGCGGGGGAGGAGAAGGAGAGAGAGGTC