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Detailed information on CNT30102477


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694621Oryza rufipogonOryza sativa98.7491.41100628forward
CNT30554333Oryza rufipogonOryza glaberrima98.7497.9799.68628forward
CNT30576943Oryza rufipogonOryza barthii98.5896.9199.68627forward
CNT30117124Oryza rufipogonOryza nivara98.7496.6299.52628forward

Expression of CNT30102477

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MIMSPDNGEPFQNFLVELSSLMKFKEIYRAERSAFRPNWE*

>peptide 2 (75 aa)
STLSMNAADSSLLAAPPTPPSRGQYRACLWIMCILSAQDVCTRISRLELAISGDPEAKIIDCPFDCICGELKISS*

Sequence

>CNT30102477
CCTCAACCTTATCCATGAACGCGGCCGATAGCTCGCTGCTCGCTGCCCCTCCCACGCCTCCCTCGCGCGGACAGTATAGGGCATGCCTTTGGATCATGTG
TATTTTATCTGCTCAAGATGTGTGTACAAGAATAAGTAGGCTGGAGTTGGCAATAAGTGGTGACCCGGAGGCTAAGATTATTGATTGCCCATTTGATTGC
ATCTGTGGAGAACTGAAGATATCCAGCTGAATTTTCTTGTGGACATAACAATCAAAAGCATGAGAGGAATCGAACAAAGATTGAATTTGTGTTTTTGAGA
AGCCTACTTAGGTCAGCCACATCACTCCGACGGATCACATTGGCTTTCCATGGTATGATTATGAGTCCTGACAATGGGGAGCCATTCCAGAACTTCCTGG
TTGAACTATCCAGCCTGATGAAATTCAAGGAAATTTACCGCGCTGAGAGATCCGCATTCAGACCAAACTGGGAGTAAGCGTGATCATTCAGAAACAGCGT
GCTACAGATCAACACCAAAATTCCTAAATTGCATGTCCTTGCCAAAATTGTAATAGACAATGTGTAATGCTTGTATTATATTTTTCTGCCTTCTAATATA
TTCGACAATACTCTTGCCGCTTTCATATAAAAAAAC