Detailed information on CNT30102475


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006451, E-value = 3e-118

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555133Oryza rufipogonOryza glaberrima50.8320.7896.26214forward
CNT30577195Oryza rufipogonOryza barthii94.7785.6297.49399forward
CNT30117522Oryza rufipogonOryza nivara51.3121.5895.83216forward

Expression of CNT30102475

Peptides detected in this lncRNA

>peptide 1 (30 aa)
VHMRSFKISNSYSILASWLLVRILNSPCIA*

Sequence

>CNT30102475
ATGTACACATGAGGTCATTCAAGATCAGTAACTCATACTCTATTCTAGCAAGCTGGCTGTTGGTGAGAATTCTGAATTCTCCTTGCATCGCCTAACGAAG
ATAGAAGATCGGAGTATTATACATCAACCAATTTCTTAGCTGGGAGTGTTACTCCTGCATTGCTCTACAATTTATGGGTCATGTAATTTGATCTCTCACA
TAATCTATAGCGAGGAGTAACAAAGCTTATTTTTGCATTGATGATGCGGGAGCTCGCCGCCGATGCCACCGTCTTGTTGCCGACCTTGACGAAGTCGAGG
ACCACGCTGTAGTACTGTCCACGTCCCCGGCGACGAGCGTCGTGCTCGCTGCGCCGAGCTCGGTGACGTTGGCGAGGGTGCCGAAGTTGAGCGCCGACGA
TGTGTTGACGGAGTGCGGGAC