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Detailed information on CNT30102474


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006248, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30109682Oryza rufipogonOryza longistaminata28.9359.998.28348reverse complement

Expression of CNT30102474

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MIKEDHTIHYALHEQHRYPYSFKPPDLINESMESTWIAVFISFFKQRVPLQP

>peptide 2 (39 aa)
MTYRHTILCYEFFSHKSNCPDIYSILSKEYYLRYRIHNC*

>peptide 3 (35 aa)
MVSIKISEHEPVANPRLKSNQQSEGSPWSKAAVHH*

>peptide 4 (71 aa)
MNFSVTKATARIYTLFYPRNIILDIGSTIAELPNVFIATTRGWLEGMTAMQTSDELKLFPEFVEQENNPCR*

Sequence

>CNT30102474
ACCTGGTTCATCGATAGCTCTGTACACTACAAAACATTCTAAAATGTGATTGGTATTCTTGTATGTTCAAGAAGTCATTTCTGGTCCACATAGACGAGTT
GAGGGCTTTGAGGCAGATAAATGGTTTTTGGGAAAATTAGACTCATGTTACCAAATTAACAGCCTGGTCAAATGACCTACAGGCATACCATTTTATGCTA
TGAATTTTTCAGTCACAAAAGCAACTGCCCGGATATATACTCTATTTTATCCAAGGAATATTATCTTAGATATAGGATCCACAATTGCTGAATTGCCCAA
TGTATTCATTGCAACTACTCGAGGATGGCTAGAAGGGATGACAGCAATGCAAACTTCTGATGAGCTGAAACTATTTCCTGAATTTGTTGAACAAGAAAAT
AACCCATGTAGATAGTCAGAACTCTTCAGCATCAACAATCAAAATCAATAATTGCTAGTTCCCAAAATCCTGTCCGTTCTGAATATATCAAGCAGTACTC
ATCGAAAATCAAAATATGTGCAGTCAAATTTAGAATTACAAGGGAACATAGGGTTTCAATTTTGCTTTTGATGAAAAAAAATGTAAGCAATAAAATTAGT
GGACTACTTGGAGATTTCTGAAATTACCATTGTCGTATTCAAAGGCAATTGGAGACCACTGAAGTGACCAGCCACTGCCAGGTTGTGGTCTCTGCTTCTT
CTAATAAGTAACCGGGTTTCTTCAGAACCGACGGATCAAATTCTACACTCATTCCAAAATACTGGCATGGTTATATTATGCATAAAAATTCAGAACAAAC
TGAAAGGTTGATTTCAAATACTACAGAGTGAGGATGGTTAGTATAAAAATTTCAGAACATGAACCAGTTGCTAATCCACGGCTGAAATCCAACCAGCAGA
GTGAGGGTTCACCCTGGAGCAAAGCAGCTGTGCATCATTAGTTACCATGGTTAGGCCCTGCAAGTCAAATACGAAAATGAATCAATCAATTAAGCTGAAA
ATAGCGTAAAAGATTCTACCTTGTATCTGAACTCTGAAGGAAGCAGTATGATTAAAGAGGATCACACCATCCATTATGCACTTCATGAACAGCATAGATA
TCCTTATTCATTCAAACCCCCTGATCTGATCAATGAATCGATGGAGTCAACATGGATAGCAGTTTTCATTTCATTTTTTAAACAACGAGTCCCCCTTCAG
CCT