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Detailed information on CNT30102461

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30695100	Oryza rufipogon	Oryza sativa	54.28	54.43	100	393	forward
CNT30671790	Oryza rufipogon	Setaria viridis	8.01	25.89	89.66	58	forward
CNT30554258	Oryza rufipogon	Oryza glaberrima	34.81	46.49	96.03	252	forward
CNT30596584	Oryza rufipogon	Oryza meridionalis	19.48	24.56	80.85	141	forward
CNT30576932	Oryza rufipogon	Oryza barthii	45.44	54.92	93.62	329	forward

Expression of CNT30102461

Peptides detected in this lncRNA

>peptide 1 (41 aa)
HADNGINFLIYFLLLFERQRTYIYNKIPVIIISHIYIILHT*

>peptide 2 (40 aa)
MARTTAMAAASATPDIFGVSICNTTTQFALLIDSDCVCVR*

>peptide 3 (29 aa)
YMQTMELIFSFIFFFYSNDNVHIYIIRSP*

Sequence

>CNT30102461
TACATGCAGACAATGGAATTAATTTTCTCATTTATTTTCTTCTTTTATTCGAACGACAACGTACATATATATATAATAAGATCCCCGTAATTATTATTTC
GCACATTTATATCATACTCCATACATAGTTAAAGTAAATACTGTATTAATAACTTATTAAGCAGAGAGAGTGAGGCCACGCTCGAAGGGGCGCTCTCCCT
GGAAGTTGCCGGCGGGGTTGTAGTTGCAGGTGATGAAGACGCCGCCGTTGTCGCAGTCCACGCGGGCGCAGCCGATCGCCGTCGTGCGGCTCCACATCAC
CTGCGTGTAGTGGAGGCACGAGTCCCACGACCCCAGCTGTTGACGGCGTCCGCTGCCGTCCACTCGCTGCCGGAGCCTCCGAAGAGGTTCTCGCCGTAGC
CGGCCTTCTCCCAGCTGCCGGAGTGGATGAGCGCGCAGTCGCCGGCGCGCTCCGCCGCGTAGTTCTCCGCGTACGCCGCCACGGCGTCGTCCCAGACCAC
CTCGCCGACGCCCTCCACGCGTCGCGCCGCGTTGTGGAGGTCCACGAAGTCCTGCGGCGAGTTCTGCGCCACCGCCGGCGTGGTCGCCATGGCCAGAACG
ACGGCAATGGCTGCCGCAAGTGCTACTCCCGATATCTTTGGTGTCTCCATATGCAACACTACTACACAATTTGCTCTCTTAATCGATTCCGATTGTGTGT
GTGTTCGTTGAATGCTGATGCGAT