Detailed information on CNT30102444


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT007020, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693123Oryza rufipogonOryza sativa71.0653.8987.841365forward
CNT30596548Oryza rufipogonOryza meridionalis66.6370.2985.621280reverse complement
CNT30115703Oryza rufipogonOryza nivara61.0669.2989.941173forward

Expression of CNT30102444

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MRGIHFSPFPSSSTSESNLTGALSLLPVHDLPSAVPAISLTPFAGHCHP*

>peptide 2 (56 aa)
MEQVLLMLVTEKLCHDKANVFGTSWIAGKAYIYCSMNIIKTIRIAVLTVIGHWDSQ*

>peptide 3 (52 aa)
MDGNLWYFKHQIIRLPISDLFALEQGKLLLFLSFEHNNPIFYISSILCISHT*

>peptide 4 (44 aa)
MSVSESLVLGPDKTARCSSANIHDYGMSSPKTSLSQCPVGKFAYI

>peptide 5 (33 aa)
MLYSPLLQPHIFFRVRLMFLLKPGVQSYKLISF*

>peptide 6 (43 aa)
PQTELEALLSFLSPFHGRLSLSSADLPHRSNTGQSLAPSSFPR*

>peptide 7 (43 aa)
MNLDWDSTVEMVDFRVASTVPTNIRLPSTCEEHTSTTAILVWA*

>peptide 8 (32 aa)
MTGVSQPVLSKNPGNARTTLAADNITFRAYGD*

>peptide 9 (57 aa)
HKPSLKLSSLFSLLSMAGYHCRRPISLTGAIPDNPSRHRAFLDERNPFFPFPLFLHL*

Sequence

>CNT30102444
CCCACAAACCGAGCTTGAAGCTCTCCTCTCTTTTCTCTCTCCTTTCCATGGCCGGCTATCACTGTCGTCGGCCGATCTCCCTCACCGGAGCAATACCGGA
CAATCCCTCGCGCCATCGAGCTTTCCTCGATGAGAGGAATCCATTTTTCCCCTTTCCCCTCTTCCTCCACCTCTGAATCAAACCTCACCGGAGCTCTCTC
TCTCCTCCCGGTTCACGACCTTCCATCCGCCGTTCCGGCTATTTCCCTTACTCCCTTTGCCGGCCACTGCCATCCCTAGGTGCGTTGCAGTCGGGAACAC
CAGTGGCCGCCGGCGTTACCGCCTCCTCGCCACCGGAGCCCGGCGCCCCCTCTCCTTCTCCTCTCTGTTCGACCAAGGAGAAAAAGAAGAAAGAGACGGG
AAGAAGAAGAAGAGGAGAAAAAGAAAAAGAAAAAGGAATCCCTGACAGTAGAGTCTATTTTATATGGATGGCAACCTGTGGTATTTCAAGCATCAGATAA
TCAGGTTGCCTATTTCGGATTTATTTGCGTTGGAGCAAGGCAAGTTATTATTATTCCTCTCCTTTGAGCATAATAATCCTATATTCTATATCTCCAGTAT
CTTGTGCATTAGCCATACATGATTTTAAATGCATAACCTGAATATATAGCAAACCAGATATATGCTAGATTTTGCTTAGCCATGCCTAGTTAGATTATGC
ATAAAATATAATGAACTTAGATTGGGACAGTACGGTAGAAATGGTTGATTTCCGGGTGGCTAGTACTGTTCCAACCAACATAAGACTGCCAAGTACATGT
GAAGAACATACGAGTACGACCGCAATTCTCGTATGGGCATAGACCTAGCTGATTAAGTTATCTAGCAAAGGTGATACCTCTGTATAGTGGTTCTTCTTAA
GTCCTCGCGCAGGAGGCAAACTTACACCGAGCAGGGCGATTGTGATATTTACCGAGGCGCAGGTAAATATCTTGATTATCTCGCGAGCTGTGTGTGTGAA
TTATGAAAACCTGATTGAGATGACGGGGGTCTCTCAACCAGTTCTCTCTAAAAACCCCGGGAACGCTAGAACTACTCTCGCTGCTGATAACATTACGTTC
AGAGCGTATGGGGACTAGAGTTCATGGAACAGGTACTACTGATGTTAGTGACCGAAAAGCTTTGCCATGACAAGGCTAATGTGTTTGGCACGTCATGGAT
TGCGGGTAAAGCGTACATCTACTGCAGTATGAATATTATTAAAACTATTCGAATAGCCGTGCTCACGGTTATCGGGCATTGGGACTCACAATGATATCTT
GGTTAGAAACATAATTTCAAACTTTATTAAATACTGTTGCATTTAAAACATTATAGACTTTCCTTCTATATTCTCTGCATTCTGCAAGTAAATCTAACCC
TACTCAAATATTATTATTCCATGCATTCATTGTTGATTAATATAATAGCTTACTGAGTATGTTGTACTCACCCTTGCTTCAACCCCACATTTTTTTCAGA
GTCCGTTTGATGTTCTTACTGAAGCCGGGAGTTCAATCATATAAGTTAATCTCATTTTAACTTAGTTCTCAAGTATAGATTAGATAGATGGTTTAAGTCT
ATAGCAAAACACTAGAGTTGAGTCATCGTATAGCTTCTGCTGTAATAGTTAGCCACAAGCTTGTAAATACCCTTATATTTTGTAATATTATCTCCTTTGA
AACCTTGATCAAATGTATGCAATGAAGATCCAGATCATTGAACCTATATCAATCTACTGATCCAGGGCTTGATACAGTCTAAACATGTCGGTTTCCGAAT
CATTAGTTTTGGGACCCGACAAGACGGCGCGGTGTTCATCGGCAAATATCCACGATTATGGTATGTCTTCCCCCAAAACATCACTTTCGCAGTGTCCTGT
AGGAAAATTTGCCTATATTTA