Detailed information on CNT30102429


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671545Oryza rufipogonSetaria viridis44.1678.587.58314forward
CNT30499723Oryza rufipogonCoffea canephora15.0520.1182.24107forward
CNT30270249Oryza rufipogonChenopodium quinoa21.87.7583.87155forward
CNT30381526Oryza rufipogonManihot esculenta22.3623.9579.87159forward
CNT30287901Oryza rufipogonTriticum aestivum16.8845.2891.67120forward
CNT30224742Oryza rufipogonHordeum vulgare11.1133.7687.3479forward
CNT30393905Oryza rufipogonTriticum turgidum21.2446.4688.74151forward
CNT30144912Oryza rufipogonMedicago truncatula14.9139.4183.02106forward
CNT30314318Oryza rufipogonCamelina sativa18.4242.8188.55131forward
CNT30450304Oryza rufipogonSaccharum spontaneum45.8558.9583.74326forward
CNT30216Oryza rufipogonZea mays13.2230.5290.4394forward
CNT30608876Oryza rufipogonGossypium raimondii2735.7579.69192forward
CNT30229639Oryza rufipogonAnanas comosus38.2646.2683.46272forward
CNT30655297Oryza rufipogonRosa chinensis18.4223.6982.44131forward
CNT30689838Oryza rufipogonTriticum urartu35.384.2390.44251forward
CNT30362547Oryza rufipogonSorghum bicolor31.9346.7190.75227forward
CNT30572236Oryza rufipogonVitis vinifera25.4630.5282.87181forward
CNT30112612Oryza rufipogonFicus carica43.3233.7382.79308forward

Expression of CNT30102429

Peptides detected in this lncRNA

>peptide 1 (31 aa)
KIQNSLTVSATLIKIVYNLSTKEYISTQVTF*

>peptide 2 (31 aa)
MDRCEPTAMRRSKPEGLPKQQRWSECGFADP*

>peptide 3 (73 aa)
MPHVWVSGPVTRVVNGSMRTHSNEKIEARRIAQTTTMVGVRFCRPIRPLRKGYKWTITQKAKKSLPKSGPHDW*

Sequence

>CNT30102429
AAGATACAAAACTCGTTGACAGTGTCAGCCACTCTCATCAAAATAGTATATAACTTATCAACAAAAGAATACATATCGACACAAGTAACTTTCTGATGAG
CAATATTTTCTGGTCTGTACGTAGCTGTAAATAAAGCCACCTCCTAATAACTTAAAACACAATTGGTGGCAGTGGCACTTTGTATTCTGAAAAAACACAA
CTGGCAGTATTTCTGTCTCTACAATCCCCTGCTTTCTTAGCAGTTGATGCCACATGTTTGGGTATCTGGGCCGGTGACACGGGTGGTGAATGGATCGATG
CGAACCCACAGCAATGAGAAGATCGAAGCCAGAAGGATTGCCCAAACAACAACGATGGTCGGAGTGCGGTTTTGCCGACCCATAAGACCCTTGAGGAAGG
GGTACAAGTGGACAATCACCCAGAAGGCAAAGAAGAGCTTGCCAAAGAGCGGTCCCCATGATTGGTAGCCGCTGTTGATCGCGTATGAGATACCAGCAAC
AACACCGACCAGGTTAATGATCAAGATGGTCGTCGGTGGGATGAGAAGCGTTGTCCACTTGAACATGTAGAGCTCAGCAAAGTCGCCATCTTCATCAGAA
GCCTTTGAGGAGACCCTGGAAGACGGCAAAAAGATGCGCAGATATACCTCCAATAACCCAGAACTGTTCATTCCTCCACCACTCATCGATGCCAACACCA
CTCCACCTCAT