CANTATAdb - search

Detailed information on CNT30102414

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30695070	Oryza rufipogon	Oryza sativa	53.64	51.78	99.35	611	forward

Expression of CNT30102414

Peptides detected in this lncRNA

>peptide 1 (64 aa)
RTSLPRLPPPSPPLTPETAPISSPFSFAHPPHAHIHPVPRPLAVARASPSSIPSLLTLILSSAW*

>peptide 2 (37 aa)
MSVEFDPSVLKKPGYLLEEAETTTWQWLVTSVVSNCL*

>peptide 3 (31 aa)
MLFMKCIMDGVILFNHTASFRVQIQGPNHGN*

>peptide 4 (79 aa)
PHLPPTPPSAVSAADAGNRPNLLPLFIRTPSSRPHPSRPPPTRRRTSLPVVDPLPSHPHPQFSLVDQFSVEKQAVKTST*

Sequence

>CNT30102414
CCGCACCTCCCTCCCACGCCTCCCTCCGCCGTCTCCGCCGCTGACGCCGGAAACCGCCCCAATCTCCTCCCCCTTTTCATTCGCACACCCTCCTCACGCC
CACATCCATCCCGTCCCCCGCCCACTCGCCGTCGCACGAGCCTCCCCGTCGTCGATCCCCTCCCTTCTCACCCTCATCCTCAGTTCAGCTTGGTAGATCA
GTTTAGCGTTGAGAAGCAAGCTGTTAAAACATCCACTTAATGCAGAAGAGGCTGAAGGGGGACTCGTTGTTTAAAAAATGAAATGAAAACTGCTATCCAT
GTTGACTCCATCGATTCATTGATCAGATCAGGGGGTTTGAATGAATAAGGATATCTATGCTGTTCATGAAGTGCATAATGGATGGTGTGATCCTCTTTAA
TCATACTGCTTCCTTCAGAGTTCAGATACAAGGGCCTAACCATGGTAACTAATGATGCACAGCTGCTTTGCTCCAGGGTGAACCCTCACTCTGCTGGTTG
GATTTCAGCCGTGGATTAGCAACTGGTTCATGTTCTGAAATTTTTATACTAACCATCCTCACTCTGTAGTATTTGAAATCAACCTTTCAGTTTGTTCTGA
ATTTTTATGCANTGTTCTGAAATTTTTATACTAACCATCCTCACTCTGTAGTATTTGAAATCAACCTTTCAGTTTGTTCTGAATTTTTATGCATAATATA
ACCATGCCAGTATTTTGGAATGAGTGTAGAATTTGATCCGTCGGTTCTGAAGAAACCCGGTTACTTATTAGAAGAAGCAGAGACCACAACCTGGCAGTGG
CTGGTCACTTCAGTGGTCTCCAATTGCCTTTGAATACGACAATGAATAAGTGTAATTAACTGGGGGAGTGCTTCTTGAAGTAGATAGAAAGCTTTGCTAC
TTTTGAAGAAAACAAGTTGATAATGGAGAAATTGGGTGAGACATCATTCATTCTACACAACTTTGAGAACTGGCTGAGATGTAAGCCTGGAAAATAGTCA
TCCCATGTGAATAACACAAATGAACATCGAAGATAGCTCATGCAACTGTACACGTGACATGGGTTGTTCAATCCATAACACTATGCATTGTTGATCGATT
GGTGATTATTGTTCCCTATATATTCTCTGGGCATTGACA