Detailed information on CNT30102407


BLAST search results

BLAST vs Swiss-Prot:
sp|P14225|PSAK_CHLRE, E-value = 9e-13

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520562Oryza rufipogonSetaria italica58.7945.5494.61204forward
CNT30242614Oryza rufipogonAvena sativa42.0740.993.84146forward
CNT30659915Oryza rufipogonTriticum dicoccoides44.0942.1591.5153forward

Expression of CNT30102407

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MIWPRTTPTPMMWPTAPQASVSASVNPAGSPVCRPESRASSFSPAVDFLFADGASPNLPANSISVVV

>peptide 2 (32 aa)
MIITSSITQALMHRLHIGVLIRVTSLMNLISR*

Sequence

>CNT30102407
ACAGAAACAAAATTAAGCTAGATAAGCACTGATTCCACGCACAATTTACATGATCATTACATCGTCCATCACACAGGCACTCATGCATCGATTACACATA
GGAGTATTGATTCGTGTGACTAGCTTAATGAATTTGATTAGCCGATGATCTGGCCGAGGACGACGCCGACGCCCATGATGTGGCCGACGGCGCCGCAGGC
CAGCGTGTCGGCGAGCGTGAACCCGGCGGGGTCGCCGGTCTGCAGGCCGGAGTCGCGCGCCTCCAGCTTCAGCCCCGCCGTCGACTTCCTGTTCGCCGAC
GGCGCCAGCCCGAACCTCCCCGCGAACAGCATCAGCGTCGTCGTCGT