Detailed information on CNT30102405


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SH66|DIR5_ARATH, E-value = 1e-48

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694919Oryza rufipogonOryza sativa90.6268.8299.68618forward
CNT30308915Oryza rufipogonTriticum aestivum39.354.2580.6268forward
CNT30386863Oryza rufipogonTriticum turgidum41.3531.6182.98282forward
CNT30243125Oryza rufipogonAvena sativa48.9732.1883.23334forward
CNT30576947Oryza rufipogonOryza barthii10071.7194.72682forward
CNT30551414Oryza rufipogonOryza brachyantha17.4541.994.96119reverse complement

Expression of CNT30102405

Peptides detected in this lncRNA

>peptide 1 (31 aa)
WDTFCTFIGAYNSSSKQVYFAMEINHASHRV*

>peptide 2 (51 aa)
MKKSPVPPTTEMSLVFSAMMSAPMRLSVPRRPVELNTMEKANHALNASLLL*

Sequence

>CNT30102405
GTTGGGATACATTTTGCACATTCATCGGTGCATATAACTCGTCAAGCAAACAAGTATATTTCGCGATGGAAATAAATCACGCATCACACCGTGTATAGCA
GTATTATATGTTAATTACCATCTATCAGAATTCAGAGCAACGTAATCAGACGACGTAGCATTCGTAGAGCTTGATGTCCATCTGCAGCCGGAAGTAGGTG
AAGCCCTCGAAGGCGTCGGTGCGGAGGGTGGCGACGCCGCGGGACATGAAGAAGTCGCCGGTGCCGCCCACGACGGAGATGTCCCTCGTCTTCTCGGCGA
TGATGTCGGCGCCCATGAGGTTGAGCGTGCCGCGGCGCCCCGTGGAGTTGAACACGATGGAGAAGGCGAACCACGCGTTGAACGCCTCCTTGCTGTTGTA
GAGGTAGACCCCCTGCGCGCGCACCGCCGTCTCCTCCAGCGACGGCGGCAGCGCCCTCCCCTCCGTCATCGGGTCGTTGAACACCACCACCTGCCCGAAG
AAGGTGCCGCCGGTCGACGGCACGGCGGTGGCCAGCGCCGTCGGCTTGGCGGCCGCCGCCGACGTGGAGTTGGCGGTGCTGTTGCTGTAGTCGTAGAGGA
TGTCGTGGAGGTAGAGCCTCATCTCCTTGCACGGCTCGTCGTAGCTCCTGACGAGCCTCCTGCCGCCGCTGCGGCCGCCATT