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Detailed information on CNT30102385


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006119, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30107957Oryza rufipogonOryza longistaminata85.8588.2895.181183reverse complement
CNT30576960Oryza rufipogonOryza barthii101.2357.7997.851395reverse complement
CNT30604708Oryza rufipogonOryza punctata87.0152.87961199forward

Expression of CNT30102385

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MAKSSAASILYISSLENQPMASMYLYPLQDPTQQTSL*

>peptide 2 (33 aa)
MHHYRSLTNRKKQRFQQTACTINNHLQGYVVSN*

>peptide 3 (33 aa)
MTLIFLVYGIFERSGTQPSVACNSYLQQSNCKLA

>peptide 4 (65 aa)
MFIACISEIFHHSRWQNLQLPPSCTFLLLKINQWHQCIFTLYKILPNRHHCKYREMQYTEERNLI*

Sequence

>CNT30102385
CTAGATTTTAGCCTGGCCCATCTATGATGTAGCATATTTTCAGCCCAATTTTATTATATCCATTTGCTTTAATATCAAATAATAAATGGGCCAAGTCCAT
TGCAAAAGCCCATATAAGCCCAAACATTATACCACACCATTTTCAACCCATCATATTAGTATCAAATAACAAGTGGGCTAAGCCCATATAGGCCCAACAA
TCAAACACAATAACAACCCATATAGCACAAAGGTTACAACCCATATAGCAACTGGTTCTTCTGATAATGCACCATTACAGAAGTCTTACAAACCGAAAAA
AACAAAGGTTTCAACAAACTGCATGCACCATCAACAATCACCTACAAGGATATGTTGTATCAAACTAGCAAAGATATCTGAATCTAAGGTTGCCAAATGT
TCATAGCATGTATTTCTGAGATATTTCACCACTCCAGATGGCAAAATCTTCAGCTGCCTCCATCCTGTACATTTCTTCTCTTGAAAATCAACCAATGGCA
TCAATGTATCTTTACCCTTTACAAGATCCTACCCAACAGACATCATTGTAAGTACAGAGAAATGCAGTATACAGAAGAGAGAAATCTAATCTAGTTCTCA
ACAAGCTGACATAGTATACAGTAGAGAGAGAAGTACAGAGAAATGCAGTACTGGATGCAGCTTTATCACTACAGGAAAGAAACTCTTAAGTTAATTAATT
TCAGGCTAAGTTAAAACTACTGGTGGAACTGGGTAAATTTGGACCACTCATCCAACCAAGGATTGGAATCAAACCAGCAAGCTAAAGTCTAAAGGGTAGC
CTCTGATCAGGATCAGATTCTTCACCAGCTAATTGAAGCAGAAATGCTGAATGCTAAATTGCTTGCTTCTGTAAAGCGCACTGAACTGAACTAAATGAAT
TACAGTGTGAAAGAAGATACAGTAGAAGTAGCAGATTACTTCTCTGTTTTAGCAGATTAGCTCATGGCAAGATGTTTAGATAATGGAATAGATATCTAGT
TTGATTGCCAGATGCAAGTTGATCTCTTTACCCAGAAATTGAGCATGAACATGCACAGTGCATGATGCACTCACTCTCATTCATCAGTCATCACCTACAT
GAATGTAATTTGTTTACAGGTGGTTCTTAATAACTACTAATTAAAGTATTGGTGTAAGCATCTAATGTATGCAGACTGCATGCCAATATTCTTAGGGATC
ACATGAATAAAAATCATTTTGAGGTAGCAAATGTTTGTGTTCAAGAATAGGAAAATGTAGTAAGAAGGTGGGAAAATGACACTTATCTTTCTAGTCTATG
GGATCTTTGAACGCAGTGGCACACAACCCTCTGTAGCTTGCAATTCATATCTGCAACAGAGCAACTGCAAGCTTGCAT