CANTATAdb - search

Detailed information on CNT30102367

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004201, E-value = 9e-75

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30597157	Oryza rufipogon	Oryza meridionalis	11.67	20.98	87.59	145	forward

Expression of CNT30102367

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MLIPIAKLFCLQIKLHAMMNILLVNMPCLDYCLPLNLCNHDYV*

>peptide 2 (58 aa)
MGKVVLSLASLSAEPRRCSSPSSLFILVSVPFVWPFLSVGSSSRYTATAVSIAAACST*

Sequence

>CNT30102367
CCAATTTCTTCCCCCAAATCAGATCCATTCAAGCCGGATTAATTCAAATTAGTTAGGGGAATGGAATCCCCATCCCCTCCTCATTATTTCCCCTGAATTT
TCCCCCTCAGTCCGGCCCTTAATCGCCGAGATTTAATCCCCTTTCATTGACCGCCATTGATGCCGCCGTTCACCTCCTCCGGCGCCGTTTCCACCCTCTC
CCGTGGCCGGCAGTCCCTCCTTTCCCTATAAAACGGAGCCTCCTCCCTCCCCTCTCTCCGGTTCGCCAGTTCCCGAGGTCCCTAGGCACCTCCCCACCGC
CCTCCTCTCTCTCCGTGCCGCCAGCCACCTCCAGCCGCCCGTGCCGCCACGTCAGTGCGCCGGTTGGCCGCGCCACCACCTCCCTCGGCGTCGCACCTGC
CTCCCCTCCACCGACGTCGCCTCCGTTTGCGCGGAGACCACCGTAAGCGCGCCCCCGCCGGCAACCAGTGGCGTTGCCGCCACTGCACCGCCTCCAGCCG
CCCCCGCCGTGGCGCCATAGCACCAGCTGACGTCGCCGTCTCCTCCTCCGACGCCGCAGCATCGCTCTCCACTCTGGCCGCTGCCCGCCTTTGCCCGGAG
GCAACCGCACCGGCCTCTTCATCCGCCTCGCCGGAGTTCTTTTGGTCGGCCCTTCCTCCTCGCCCGTGCGCCGCTCGGCCGAACCACCACCACCTCAGGC
ATTGCATGGGCAAGGTCGTCCTCAGCCTCGCCTCCCTTTCGGCCGAACCCCGCCGGTGTTCATCGCCGTCGTCACTTTTCATCCTCGTCAGCGTCCCCTT
CGTTTGGCCGTTCCTCTCCGTTGGCTCGTCGTCTCGCTATACCGCCACCGCCGTCAGCATCGCAGCAGCGTGTTCCACGTAGGGATGCAAGCGGGACAGC
TATAGAGCCCGAGGGAGTTGCGGATCCAAGCGAAGGTCAAGACCCGCAAGACTTTGAGCAAGGCAAGTCATCACTATTCCTTGAACATGTTGATCCCAAT
TGCGAAATTGTTTTGTTTACAAATAAAATTGCATGCAATGATGAACATCCTACTTGTGAATATGCCATGCCTTGATTATTGTTTACCCTTAAATCTTTGT
AACCATGATTACGTATGAGTCCCTAGTCAACTATGACCTTTGCTTAGAAATGCTATTCTAGCATCATGCATACTCATATTTATCAAATGCTATATGCTTG
GGCAATTACCTTTGGGAAGGTAATTGAGATGCGGCATGTGGAG