Detailed information on CNT30102359


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004083, E-value = 6e-163

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694818Oryza rufipogonOryza sativa45.6211.8889.04219reverse complement

Expression of CNT30102359

Peptides detected in this lncRNA

>peptide 1 (52 aa)
DGACGSSPGDRAGPPLPVRPGTQGEILSSLYVGDSRPSKEHKTRAMYTGSGR*

>peptide 2 (38 aa)
MDGDLYGCCPNDLLMGRHIPTSTSAGGRRDVGTWLSADD

>peptide 3 (67 aa)
TERVAPHRETAQAPLCRFGRGLRVKFSALCMWEIRDRRKSIRHGRCIQVRAAEKRNTLLLCFWWICV*

>peptide 4 (67 aa)
MKELQSMNQPLPCSGFRISPRPLSKWARSSFYISRGYHMHPLSLSKLDLPSLHKWTEICMVAVRMTF*

Sequence

>CNT30102359
TGACGGAGCGTGTGGCTCCTCACCGGGAGACCGCGCAGGCCCCCCTTTGCCGGTTCGGCCGGGGACTCAGGGTGAAATTCTCAGCTCTCTGTATGTGGGA
GATTCGCGACCGTCGAAAGAGCATAAGACACGGGCGATGTATACAGGTTCGGGCCGCTGAGAAGCGTAATACCCTACTCCTGTGTTTTTGGTGGATCTGT
GTATGAAGGAGCTACAAAGTATGAACCAGCCTCTCCCTTGTTCTGGGTTCCGAATCTCCCCCCGTCCCCTCTCTAAGTGGGCAAGGTCCTCCTTTTATAT
CTCAAGGGGATACCACATGCACCCTCTCTCTCTTTCCAAACTGGACTTGCCTTCTCTTCATAAATGGACGGAGATTTGTATGGTTGCTGTCCGAATGACC
TTCTGATGGGACGGCACATACCTACCTCCACTTCCGCCGGAGGCAGGCGCGACGTGGGAACGTGGCTGTCTGCTGACGAC