« Back to Oryza rufipogon search


Detailed information on CNT30102347


BLAST search results

BLAST vs Swiss-Prot:
sp|H6U1I8|GLIP_TANCI, E-value = 8e-21

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30576835Oryza rufipogonOryza barthii101.6396.496.93750forward

Expression of CNT30102347

Peptides detected in this lncRNA

>peptide 1 (67 aa)
MVALCEGWTRSQKAHLSRSAQSVEPTWQSSSAPSLPLPQHAASTLVYPDAAGSANASWPAAWASAME*

>peptide 2 (34 aa)
MNKYILHYDALILSELNLLAEYTLTNKIRVRSSP*

Sequence

>CNT30102347
TCGTGAAATCCTCAAATTATCACAGATCACATAATAGGATATCTCCGAATCCTCAAATCGATCATCTCCAAATACATCACAAATTCTAAAAAAAATTACA
TCACAATTTCTTTAGAAAAAAAATCAAAATTTGTGTGTACGTTCATTCCTGGTACACACTGCTTCGCCCCAAAAGAAAAATCAACGCATATGCATACATG
AACAAATATATATTACATTACGATGCTCTCATATTGAGTGAATTGAATTTGCTAGCTGAATATACACTAACAAATAAAATAAGAGTACGTAGTAGTCCGT
AATTAAGCAGTGGTGCGGGCGAGCTGTTTGAAGTTGATGGGCTTGGTTAATTGGGCCGGGCCGTCGTGGTAGGCCGCGGCGCTGAGCATGGTGGCCCTCT
GCGAGGGGTGGACGCGGTCCCAGAAGGCCCACTTGTCGCGGTCGGCGCAGAGCGTGGAGCCCACCTGGCAGTCCTCCTCCGCGCCCAGCCTCCCGCTCCC
GCAGCACGCGGCGTCAACGCTGGTGTACCCGGACGCCGCGGGGTCGGCGAACGCGAGCTGGCCGGCGGCGTGGGCGTCGGCGATGGAGTAGGCGAAGCCG
GGAAGGCGCGCGGCGAGGCCGTTGAGGTCGTCGCTGCAGGCGCCGGTGGGGCTCTGCGCTCGCACCAGCGGCACGCAACCGACCAGCCCCACGTTGATGA
TGCCAAACTTCCTCGCCCCCATCTCGTACAGCTCCTGC